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高浓度单价盐因电荷过量导致的违反直觉的DNA去稳定化。

Counterintuitive DNA destabilization by monovalent salt at high concentrations due to overcharging.

作者信息

Zhang Chen, Tian Fu-Jia, Zuo Hong-Wei, Qiu Qi-Yuan, Zhang Jia-Hao, Wei Wei, Tan Zhi-Jie, Zhang Yan, Wu Wen-Qiang, Dai Liang, Zhang Xing-Hua

机构信息

Hubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Renmin Hospital of Wuhan University, Wuhan University, Wuhan, China.

Department of Physics, City University of Hong Kong, Hong Kong, China.

出版信息

Nat Commun. 2025 Jan 2;16(1):113. doi: 10.1038/s41467-024-55404-6.

DOI:10.1038/s41467-024-55404-6
PMID:39747043
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11697420/
Abstract

Monovalent salts are generally believed to stabilize DNA duplex by weakening inter-strand electrostatic repulsion. Unexpectedly, our force-induced hairpin unzipping experiments and thermal melting experiments show that LiCl, NaCl, KCl, RbCl, and CsCl at concentrations beyond ~1 M destabilize DNA, RNA, and RNA-DNA duplexes. The two types of experiments yield different changes in free energy during melting, while the results that high concentration monovalent salts destabilize duplexes are common. The effects of these monovalent ions are similar but also have noticeable differences. From 1 M to 4 M, DNA duplex is destabilized by about 0.3 kT/bp and the melting temperature decreases by about 10 C. Our all-atom simulations reveal this effect is caused by overcharging, where excessive ion absorption inverts the effective DNA charge from negative to positive. Furthermore, our coarse-grained simulations obtain a phase diagram that indicates whether DNA overcharging occurs at a given cation valence and concentration. These findings challenge the traditional belief that DNA overcharging occurs only with multivalent ions and have significant implications for polyelectrolyte theory, DNA nanomaterials, DNA nanotechnology, and DNA biophysics.

摘要

一般认为单价盐通过减弱链间静电排斥作用来稳定DNA双链体。出乎意料的是,我们的力诱导发夹解链实验和热熔解实验表明,浓度超过约1 M的LiCl、NaCl、KCl、RbCl和CsCl会使DNA、RNA及RNA-DNA双链体不稳定。这两类实验在熔解过程中产生不同的自由能变化,而高浓度单价盐使双链体不稳定的结果是常见的。这些单价离子的作用相似但也有显著差异。从1 M到4 M,DNA双链体的稳定性降低约0.3 kT/碱基对,熔解温度降低约10℃。我们的全原子模拟表明这种效应是由过充电引起的,即过量的离子吸收使DNA的有效电荷从负变为正。此外,我们的粗粒化模拟得到了一个相图,该相图表明在给定的阳离子价态和浓度下是否会发生DNA过充电。这些发现挑战了传统观念,即DNA过充电仅发生在多价离子存在的情况下,并且对聚电解质理论、DNA纳米材料、DNA纳米技术和DNA生物物理学具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/1d48bdf29644/41467_2024_55404_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/e915fe8609ee/41467_2024_55404_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/13c7ce351fdb/41467_2024_55404_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/bc7fcff65050/41467_2024_55404_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/2ce11ba0f11b/41467_2024_55404_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/1d48bdf29644/41467_2024_55404_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/e915fe8609ee/41467_2024_55404_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/13c7ce351fdb/41467_2024_55404_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/bc7fcff65050/41467_2024_55404_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/2ce11ba0f11b/41467_2024_55404_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9022/11697420/1d48bdf29644/41467_2024_55404_Fig5_HTML.jpg

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