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本文引用的文献

1
Genetic impact of external Targhee sires at the U.S. Sheep Experiment Station: a case study of introgression.美国绵羊实验站外来塔尔基父系的遗传影响:基因渗入的案例研究
Transl Anim Sci. 2024 Mar 26;8:txae044. doi: 10.1093/tas/txae044. eCollection 2024.
2
Comparison of various models for the estimation of heritability and breeding values.各种模型用于估计遗传力和育种值的比较。
Trop Anim Health Prod. 2023 Jun 24;55(4):250. doi: 10.1007/s11250-023-03665-6.
3
The heritability of fecal egg counts.粪卵计数的遗传力。
Parasitology. 2022 Jan 26;149(4):1-7. doi: 10.1017/S0031182022000014.
4
Evolution of the sheep industry and genetic research in the United States: opportunities for convergence in the twenty-first century.美国羊产业的演变和遗传研究:二十一世纪的融合机会。
Anim Genet. 2021 Aug;52(4):395-408. doi: 10.1111/age.13067. Epub 2021 May 6.
5
ggroups: an R package for pedigree and genetic groups data.ggroups:一个用于系谱和遗传群体数据的 R 包。
Hereditas. 2020 May 4;157(1):17. doi: 10.1186/s41065-020-00124-2.
6
Lamb wool shedding is a good predictor of ewe wool shedding.羊毛脱落是预测母羊羊毛脱落的一个很好的指标。
J Anim Breed Genet. 2020 Jul;137(4):365-373. doi: 10.1111/jbg.12449. Epub 2019 Nov 12.
7
On the relevance of Bayesian statistics and MCMC for animal models.贝叶斯统计和马尔可夫链蒙特卡罗方法在动物模型中的相关性
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8
Heritability estimates from genomewide relatedness matrices in wild populations: Application to a passerine, using a small sample size.野生种群全基因组亲缘关系矩阵的遗传力估计:在雀形目鸟类中的应用,使用小样本量。
Mol Ecol Resour. 2018 Jul;18(4):838-853. doi: 10.1111/1755-0998.12886. Epub 2018 May 4.
9
Quantitative genetic methods depending on the nature of the phenotypic trait.定量遗传方法取决于表型特征的性质。
Ann N Y Acad Sci. 2018 Jun;1422(1):29-47. doi: 10.1111/nyas.13571. Epub 2018 Jan 24.
10
Accounting for genetic differences among unknown parents in microevolutionary studies: how to include genetic groups in quantitative genetic animal models.在微观进化研究中考虑未知亲本之间的遗传差异:如何在数量遗传动物模型中纳入遗传群体。
J Anim Ecol. 2017 Jan;86(1):7-20. doi: 10.1111/1365-2656.12597. Epub 2016 Nov 3.

在构建遗传参考群体过程中对塔尔基羊的性能进行基准测试。

Benchmarking performance in Targhee sheep in development of a genetic reference flock.

作者信息

Wilson Carrie S, Taylor J Bret, Notter David R, Murphy Thomas W, Stewart Whitney C, Lewis Ronald M

机构信息

USDA, ARS, Range Sheep Production Efficiency Research Unit, U.S. Sheep Experiment Station, Dubois, ID.

School of Animal Sciences, Virginia Tech, Blacksburg, VA.

出版信息

Transl Anim Sci. 2024 Dec 17;8:txae176. doi: 10.1093/tas/txae176. eCollection 2024.

DOI:10.1093/tas/txae176
PMID:39749213
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11694661/
Abstract

The Targhee breed is important to range sheep production in the Western United States. The objective of this research was to integrate industry sires participating in national genetic evaluation through the National Sheep Improvement Program (NSIP) into the U.S. Sheep Experiment Station (USSES) flock, where the breed originated, to benchmark sire performance. Estimated breeding values (EBV) of industry sires ( = 16) and USSES sires ( = 12) from the 2023 NSIP Targhee genetic evaluation differed ( < 0.05) only for the NSIP Number Born EBV. This difference, and small (nonsignificant) differences favoring industry sires for maternal weaning weight, yearling fiber diameter, and yearling staple length EBV also resulted in greater ( < 0.05) Western Range Index scores for industry sires. The performance of sires' direct progeny born 2016 to 2018 was compared for 17 traits. After data cleaning, there were 664 progeny (417 from industry sires and 247 from USSES sires) with 146 to 664 records per trait. Least squares means differed ( < 0.05) for grease fleece weight, side fiber diameter, and britch fiber diameter in favor of the industry sires. Production traits were measured from the progeny and other retained descendants of both sire genetic groups from 2016 through 2022. After data cleaning, there was a range of 1,138 to 1,493 records per trait. A three-generation pedigree was constructed and the proportional assignment of each lamb to each genetic group (e.g., 0.5 industry, 0.5 USSES) was included in an augmented relationship matrix. A univariate animal model was fitted for each lamb trait and a repeated measures model for each of the three ewe traits was fitted to estimate variance components and predict breeding values. Genetic group solutions did not differ ( > 0.05) for any of these traits but provided a means by which to compare the two groups. Establishment of a Targhee genetic reference flock at USSES has been initiated, which can be used to address issues of importance to the industry.

摘要

塔尔吉羊品种对美国西部的草原养羊业很重要。本研究的目的是将通过国家绵羊改良计划(NSIP)参与全国遗传评估的行业种公羊纳入该品种发源地的美国绵羊实验站(USSES)羊群,以评估种公羊的性能。2023年NSIP塔尔吉羊遗传评估中,行业种公羊((n = 16))和USSES种公羊((n = 12))的估计育种值(EBV)仅在NSIP出生数量EBV上存在差异((P < 0.05))。这种差异,以及在母羊断奶体重、周岁纤维直径和周岁毛长EBV方面有利于行业种公羊的微小(不显著)差异,也导致行业种公羊的西部草原指数得分更高((P < 0.05))。比较了2016年至2018年出生的种公羊直接后代的17个性状表现。数据清理后,有664个后代(417个来自行业种公羊,247个来自USSES种公羊),每个性状有146至664条记录。在含脂羊毛重量、体侧纤维直径和腿部纤维直径方面,最小二乘均值存在差异((P < 0.05)),有利于行业种公羊。对2016年至2022年两个种公羊遗传组的后代及其他留种后代进行了生产性状测定。数据清理后,每个性状有1138至1493条记录。构建了三代系谱,并将每只羔羊在每个遗传组中的比例分配(如0.5行业、0.5 USSES)纳入增广亲缘关系矩阵。对每个羔羊性状拟合单变量动物模型,对三个母羊性状分别拟合重复测量模型,以估计方差组分并预测育种值。这些性状的遗传组解在任何情况下均无差异((P > 0.05)),但提供了一种比较两组的方法。USSES已启动建立塔尔吉羊遗传参考群,可用于解决该行业的重要问题。