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主要油茶栽培品种石笔木(山茶科)首个完整线粒体基因组测序的组装与分析:揭示了山茶属的多分支线粒体构象

Assembly and analysis of the first complete mitochondrial genome sequencing of main Tea-oil Camellia cultivars Camellia drupifera (Theaceae): revealed a multi-branch mitochondrial conformation for Camellia.

作者信息

Liang Heng, Qi Huasha, Chen Jiali, Wang Yidan, Liu Moyang, Sun Xiuxiu, Wang Chunmei, Xia Tengfei, Feng Xuejie, Feng Shiling, Chen Cheng, Zheng Daojun

机构信息

Institute of Tropical Horticulture Research, Hainan Academy of Agricultural Sciences, Haikou, 571100, China.

Sanya Institute, Hainan Academy of Agricultural Sciences, Sanya, 572025, China.

出版信息

BMC Plant Biol. 2025 Jan 3;25(1):13. doi: 10.1186/s12870-024-05996-4.

Abstract

BACKGROUND

Tea-oil Camellia within the genus Camellia is renowned for its premium Camellia oil, often described as "Oriental olive oil". So far, only one partial mitochondrial genomes of Tea-oil Camellia have been published (no main Tea-oil Camellia cultivars), and comparative mitochondrial genomic studies of Camellia remain limited.

RESULTS

In this study, we first reconstructed the entire mitochondrial genome of C. drupifera to gain insights into its genetic structure and evolutionary history. Through our analysis, we observed a characteristic multi-branched configuration in the mitochondrial genomes of C. drupifera. A thorough examination of the protein-coding regions (PCGs) across Camellia species identified gene losses that occurred during their evolution. Notably, repeat sequences showed a weak correlation between the abundance of simple sequence repeats (SSRs) and genome size of Camellia. Additionally, despite of the considerable variations in the sizes of Camellia mitochondrial genomes, there was little diversity in GC content and gene composition. The phylogenetic tree derived from mitochondrial data was inconsistent with that generated from chloroplast data.

CONCLUSIONS

In conclusion, our study provides valuable insights into the molecular characteristics and evolutionary mechanisms of multi-branch mitochondrial structures in Camellia. The high-resolution mitogenome of C. drupifera enhances our understanding of multi-branch mitogenomes and lays a solid groundwork for future advancements in genomic improvement and germplasm innovation within Tea-oil Camellia.

摘要

背景

山茶属中的油茶以其优质的山茶油而闻名,常被称为“东方橄榄油”。到目前为止,仅发表了一份油茶的部分线粒体基因组(无主要油茶栽培品种),山茶属的线粒体基因组比较研究仍然有限。

结果

在本研究中,我们首次重建了多齿红山茶的完整线粒体基因组,以深入了解其遗传结构和进化历史。通过分析,我们观察到多齿红山茶线粒体基因组具有特征性的多分支结构。对山茶属物种的蛋白质编码区(PCGs)进行全面检查,确定了其进化过程中发生的基因丢失。值得注意的是,重复序列显示简单序列重复(SSRs)的丰度与山茶基因组大小之间的相关性较弱。此外,尽管山茶线粒体基因组大小存在相当大的差异,但GC含量和基因组成的多样性很小。从线粒体数据推导的系统发育树与从叶绿体数据生成的系统发育树不一致。

结论

总之,我们的研究为山茶多分支线粒体结构的分子特征和进化机制提供了有价值的见解。多齿红山茶的高分辨率线粒体基因组增强了我们对多分支线粒体基因组的理解,并为油茶未来的基因组改良和种质创新奠定了坚实基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a20c/11697926/2854030f520a/12870_2024_5996_Fig1_HTML.jpg

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