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对在不同温度下饲养的撒丁岛绵羊进行基因组分析,发现了几个与环境适应和热应激反应相关的基因。

Genomic Analysis of Sarda Sheep Raised at Diverse Temperatures Highlights Several Genes Involved in Adaptations to the Environment and Heat Stress Response.

作者信息

Gaspa Giustino, Cesarani Alberto, Pauciullo Alfredo, Peana Ilaria, Macciotta Nicolò P P

机构信息

Department of Agricultural, Forest and Food Science, University of Torino, 10124 Torino, Italy.

Department of Agriculture, University of Sassari, 07100 Sassari, Italy.

出版信息

Animals (Basel). 2024 Dec 12;14(24):3585. doi: 10.3390/ani14243585.

Abstract

Livestock expresses complex traits influenced by several factors. The response of animals to variations in climatic factors, such as increases in temperature, may induce heat stress conditions. In this study, animals living at different temperatures were compared using the genome-wide Wright fixation index (). A total of 825 genotypes of Sarda breed ewes were divided into two groups based on the flocks' average temperature over a 20-year period to compute the : 395 and 430 sheep were represented in colder and hotter groups, respectively. After LOWESS regression and CONTROL CHART application, 623 significant markers and 97 selection signatures were found. A total of 280 positional candidate genes were retrieved from a public database. Among these genomic regions, we found 51 annotated genes previously associated with heat stress/tolerance in ruminants (, , , , and ), as well as immune response and cellular mechanisms related to how animals cope with thermal stress (, , , and ). Moreover, other genes were associated with milk fat (, , , and ), body weight, body fat, and intramuscular fat composition (, , , , , , and ), which might suggest the influence of environmental conditions on the genome of Sarda sheep.

摘要

家畜表现出受多种因素影响的复杂性状。动物对气候因素变化(如温度升高)的反应可能会引发热应激状况。在本研究中,使用全基因组赖特固定指数()对生活在不同温度下的动物进行了比较。根据20年期间羊群的平均温度,将总共825只撒丁岛品种母羊的基因型分为两组以计算该指数:较冷组和较热组分别有395只和430只绵羊。在应用局部加权散点平滑回归(LOWESS)和控制图后,发现了623个显著标记和97个选择信号。从公共数据库中检索到总共280个位置候选基因。在这些基因组区域中,我们发现了51个先前与反刍动物热应激/耐受性相关的注释基因(,,,,和),以及与动物应对热应激的免疫反应和细胞机制相关的基因(,,,和)。此外,其他基因与乳脂肪(,,,和)、体重、体脂肪和肌内脂肪组成(,,,,,,和)相关,这可能表明环境条件对撒丁岛绵羊基因组的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aaa4/11672698/adf1535b1264/animals-14-03585-g001.jpg

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