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一种基于空间编码无损压缩的DNA数据存储方法。

A DNA Data Storage Method Using Spatial Encoding Based Lossless Compression.

作者信息

Şatır Esra

机构信息

Computer Engineering Department, Düzce University, 81620 Düzce, Turkey.

出版信息

Entropy (Basel). 2024 Dec 20;26(12):1116. doi: 10.3390/e26121116.

Abstract

With the rapid increase in global data and rapid development of information technology, DNA sequences have been collected and manipulated on computers. This has yielded a new and attractive field of bioinformatics, DNA storage, where DNA has been considered as a great potential storage medium. It is known that one gram of DNA can store 215 GB of data, and the data stored in the DNA can be preserved for tens of thousands of years. In this study, a lossless and reversible DNA data storage method was proposed. The proposed approach employs a vector representation of each DNA base in a two-dimensional (2D) spatial domain for both encoding and decoding. The structure of the proposed method is reversible, rendering the decompression procedure possible. Experiments were performed to investigate the capacity, compression ratio, stability, and reliability. The obtained results show that the proposed method is much more efficient in terms of capacity than other known algorithms in the literature.

摘要

随着全球数据的快速增长和信息技术的迅猛发展,DNA序列已在计算机上进行收集和处理。这催生了一个新的、具有吸引力的生物信息学领域——DNA存储,其中DNA被视为一种极具潜力的存储介质。众所周知,一克DNA可以存储215GB的数据,并且存储在DNA中的数据可以保存数万年。在本研究中,提出了一种无损且可逆的DNA数据存储方法。所提出的方法在二维(2D)空间域中对每个DNA碱基采用向量表示进行编码和解码。所提出方法的结构是可逆的,使得解压缩过程成为可能。进行了实验以研究容量、压缩率、稳定性和可靠性。获得的结果表明,所提出的方法在容量方面比文献中其他已知算法更高效。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/817b/11675758/1bc2a2b1470c/entropy-26-01116-g001.jpg

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