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与……纯合变异相关的视网膜营养不良

Retinal Dystrophy Associated with Homozygous Variants in .

作者信息

Maggi Jordi, Hanson James V M, Kurmann Lisa, Koller Samuel, Feil Silke, Gerth-Kahlert Christina, Berger Wolfgang

机构信息

Institute of Medical Molecular Genetics, University of Zurich, 8952 Schlieren, Switzerland.

Department of Ophthalmology, University Hospital Zurich and University of Zurich, 8091 Zurich, Switzerland.

出版信息

Genes (Basel). 2024 Dec 12;15(12):1594. doi: 10.3390/genes15121594.

Abstract

: Neural retina leucine zipper (NRL) is a transcription factor involved in the differentiation of rod photoreceptors. Pathogenic variants in the gene encoding NRL have been associated with autosomal dominant retinitis pigmentosa and autosomal recessive clumped pigmentary retinal degeneration. Only a dozen unrelated families affected by recessive -related retinal dystrophy have been described. The purpose of this study was to expand the genotypic spectrum of this disease by reporting clinical and genetic findings of two unrelated families. : Index patients affected by retinal dystrophy were genetically tested by whole-exome sequencing (WES) and whole-genome sequencing (WGS). Segregation analysis within the families was performed for candidate variants. A minigene assay was performed to functionally characterize a variant suspected to affect splicing. : Variant filtering revealed homozygous variants in both families. The variant in patient A was a small deletion encompassing the donor splice site of exon 1 of transcript NM_006177.3. The minigene assay revealed that this variant led to two aberrant transcripts that used alternative cryptic donor splice sites located in intron 1. In patient B, a stop-gain variant was identified in the last exon of in a homozygous state due to maternal uniparental disomy of chromosome 14. : Our study expands the genotypic spectrum of autosomal recessive -related retinal dystrophy. Moreover, it underscores the importance of actively maintaining bioinformatic pipelines for variant detection and the utility of minigene assays in functionally characterizing candidate splicing variants.

摘要

神经视网膜亮氨酸拉链(NRL)是一种参与视杆光感受器分化的转录因子。编码NRL的基因中的致病变异与常染色体显性视网膜色素变性和常染色体隐性聚集性色素性视网膜变性有关。仅描述了十几个受隐性相关视网膜营养不良影响的无关家族。本研究的目的是通过报告两个无关家族的临床和基因发现来扩展该疾病的基因型谱。:对受视网膜营养不良影响的索引患者进行全外显子测序(WES)和全基因组测序(WGS)基因检测。对家族内的候选变异进行分离分析。进行了一项小基因检测,以功能表征一个疑似影响剪接的变异。:变异筛选在两个家族中均发现了纯合变异。患者A中的变异是一个小缺失,涵盖转录本NM_006177.3外显子1的供体剪接位点。小基因检测显示,该变异导致两个异常转录本,它们使用了位于内含子1中的替代隐蔽供体剪接位点。在患者B中,由于14号染色体的母源单亲二体,在纯合状态下在最后一个外显子中鉴定出一个无义突变变异。:我们的研究扩展了常染色体隐性相关视网膜营养不良的基因型谱。此外,它强调了积极维护用于变异检测的生物信息学流程的重要性以及小基因检测在功能表征候选剪接变异方面的实用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/106a/11675615/aba863a8bffd/genes-15-01594-g001.jpg

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