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新型淀粉过量4(SEX4)抑制剂的鉴定

Identification of Novel Inhibitors of Starch Excess 4 (SEX4).

作者信息

Lee Damhee, Lee Dongsun, Won Kyujeong, Kim Suhyun, Kim Youngjun

机构信息

Department of Medicinal Bioscience, Nanotechnology Research Center, Konkuk University, Chungju 27478, Republic of Korea.

出版信息

Life (Basel). 2024 Dec 20;14(12):1686. doi: 10.3390/life14121686.

DOI:10.3390/life14121686
PMID:39768393
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11678766/
Abstract

This study identified several inhibitors of Starch Excess 4 (SEX4), an enzyme in plants' starch decomposition. Our research aims to inhibit starch breakdown by SEX4 with its potential to significantly impact food security, leading to starch accumulation in plants such as potatoes, sweet potatoes, and significant crops like grains and rice. We recognized potential candidates by screening approximately 1840 chemical compounds using the phosphatase assay against NPP. The IC values of the selected candidates were determined through the NPP assay and the amylopectin assay, while K values were confirmed by calculating V, K, and values. Finally, we compared the IC values of Like Sex Four 2 (LSF2) and SEX4 to assess their selectivity. This screening yielded several potential inhibitory compounds, with F05 showing promise in the NPP assay and F09 and G11 in the amylopectin assay, all demonstrating more selectivity for SEX4 than LSF2. Consequently, we identified seven chemicals as promising inhibitor compounds, offering potential for future research and applications. However, further quantitative structure-activity relationship studies and the practical application to test selected compounds on crops will be necessary in future research.

摘要

本研究鉴定出了几种淀粉过量4(SEX4)的抑制剂,SEX4是植物淀粉分解过程中的一种酶。我们的研究旨在通过抑制SEX4的淀粉分解作用,因为其有潜力显著影响粮食安全,从而使土豆、红薯等植物以及谷物和水稻等重要作物中积累淀粉。我们通过针对对硝基苯磷酸酯(NPP)的磷酸酶测定法筛选了约1840种化合物,从而识别出潜在的候选物。通过NPP测定法和支链淀粉测定法确定所选候选物的IC值,同时通过计算V、K和 值来确认K值。最后,我们比较了类SEX4蛋白2(LSF2)和SEX4的IC值以评估它们的选择性。该筛选产生了几种潜在的抑制性化合物,F05在NPP测定中显示出前景,F09和G11在支链淀粉测定中显示出前景,所有这些化合物对SEX4的选择性均高于LSF2。因此,我们确定了七种化学物质为有前景的抑制剂化合物,为未来的研究和应用提供了潜力。然而,未来的研究有必要进一步开展定量构效关系研究,并将所选化合物应用于作物进行实际测试。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1569/11678766/10a2b4fa7001/life-14-01686-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1569/11678766/10a2b4fa7001/life-14-01686-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1569/11678766/10a2b4fa7001/life-14-01686-g001.jpg

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本文引用的文献

1
Starch phosphorylation-A needle in a haystack.淀粉磷酸化——大海捞针
Plant Methods. 2024 Jul 27;20(1):112. doi: 10.1186/s13007-024-01237-9.
2
Gradual Analytics of Starch-Interacting Proteins Revealed the Involvement of Starch-Phosphorylating Enzymes during Synthesis of Storage Starch in Potato ( L.) Tubers.淀粉相互作用蛋白的渐进式分析揭示了在马铃薯(L.)块茎中储存淀粉合成过程中淀粉磷酸化酶的参与。
Molecules. 2023 Aug 24;28(17):6219. doi: 10.3390/molecules28176219.
3
Mixed and non-competitive enzyme inhibition: underlying mechanisms and mechanistic irrelevance of the formal two-site model.
混合和非竞争型酶抑制:正式的双位点模型的潜在机制和机械无关性。
J Enzyme Inhib Med Chem. 2023 Dec;38(1):2245168. doi: 10.1080/14756366.2023.2245168.
4
LIKE EARLY STARVATION 1 alters the glucan structures at the starch granule surface and thereby influences the action of both starch-synthesizing and starch-degrading enzymes.类似于早期饥饿 1 改变了淀粉颗粒表面的葡聚糖结构,从而影响了淀粉合成酶和淀粉降解酶的作用。
Plant J. 2022 Aug;111(3):819-835. doi: 10.1111/tpj.15855. Epub 2022 Jul 5.
5
Integration of transcriptomic and proteomic analyses reveals several levels of metabolic regulation in the excess starch and early senescent leaf mutant lses1 in rice.转录组和蛋白质组分析的整合揭示了水稻中过量淀粉和早期衰老叶片突变体 lses1 在几个代谢调控水平的作用。
BMC Plant Biol. 2022 Mar 23;22(1):137. doi: 10.1186/s12870-022-03510-2.
6
A dominant mutation in β-AMYLASE1 disrupts nighttime control of starch degradation in Arabidopsis leaves.β-淀粉酶 1 中的显性突变破坏了拟南芥叶片中淀粉降解的夜间控制。
Plant Physiol. 2022 Mar 28;188(4):1979-1992. doi: 10.1093/plphys/kiab603.
7
Identification of HN252 as a potent inhibitor of protein phosphatase PPM1B.鉴定 HN252 为蛋白磷酸酶 PPM1B 的有效抑制剂。
J Cell Mol Med. 2020 Nov;24(22):13463-13471. doi: 10.1111/jcmm.15975. Epub 2020 Oct 13.
8
Functional Analysis of Starch Metabolism in Plants.植物淀粉代谢的功能分析
Plants (Basel). 2020 Sep 6;9(9):1152. doi: 10.3390/plants9091152.
9
Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production.通过敲低水稻中 OsSEX4 基因实现淀粉瞬态积累的遗传工程化,以提高生物乙醇产量。
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10
Modification of Cassava Root Starch Phosphorylation Enhances Starch Functional Properties.木薯根淀粉磷酸化修饰增强淀粉功能特性。
Front Plant Sci. 2018 Oct 30;9:1562. doi: 10.3389/fpls.2018.01562. eCollection 2018.