Chatzikyriakidou Anthoula
Laboratory of Medical Biology-Genetics, Faculty of Medicine, School of Health Sciences, Aristotle University, 54124 Thessaloniki, Greece.
Genetics Unit, "Papageorgiou" General Hospital of Thessaloniki, Faculty of Medicine, School of Health Sciences, Aristotle University, 54124 Thessaloniki, Greece.
Int J Mol Sci. 2024 Dec 13;25(24):13377. doi: 10.3390/ijms252413377.
This study aimed to investigate whether genes with different modes of inheritance differ in the presence of promoter-enriched CGI loci. For each autosomal chromosome, the author searched for variations in the total number of diseases' phenotypes with autosomal dominant (AD) and recessive (AR) inheritance for a list of promoter-poor CGI (CGI-) and promoter-enriched CGI (CGI+) genes using the OMIM database. Then, the CGI- and CGI+ genes displaying random allelic or bi-allelic expression were examined. The author evaluated whether there was a distinct distribution of AD and AR diseases in the groups of chromosomes based on their SNP hotspot density. The same analysis was conducted for the X chromosome. The SPSS statistical package was utilized. The distribution of AD and AR diseases between CGI- and CGI+ bi-allelic genes significantly differed in autosomal chromosomes 6 and 17, which show intermediate SNP hotspot density. Additionally, a statistically significant difference was observed in AD and AR diseases in the remaining autosomal chromosomes with low SNP hotspots between their randomly allelic expressed CGI- and CGI+ genes. Specifically, AD diseases were related to CGI- genes, while AR diseases were associated with CGI+ genes. In the X chromosome, X-linked dominant (XLD) diseases were mainly found in CGI+ genes, and X-linked recessive (XLR) diseases were found in CGI- genes, regardless of the X-inactivation process. It is essential to study inheritance and classify genetic variants in a more stochastic way than the terms "Dominant" and "Recessive," and their derivatives, such as "Codominant" and "Incomplete Dominant," are applied in Mendelian and non-Mendelian inheritance. This concept may further explain the "Reduced Penetrance" and "Variable Expressivity" in certain human diseases. All the above suggests a need to reassess how genetic and epigenetic data are studied and utilized for genetic counseling or precision medicine.
本研究旨在调查具有不同遗传模式的基因在富含启动子的CGI位点存在情况上是否存在差异。对于每一条常染色体,作者使用OMIM数据库,搜索了具有常染色体显性(AD)和隐性(AR)遗传的疾病表型总数在启动子缺乏的CGI(CGI-)和启动子富集的CGI(CGI+)基因列表中的变化。然后,检查了显示随机等位基因或双等位基因表达的CGI-和CGI+基因。作者根据SNP热点密度评估了AD和AR疾病在染色体组中是否存在明显分布。对X染色体进行了相同的分析。使用了SPSS统计软件包。在具有中等SNP热点密度的常染色体6和17中,CGI-和CGI+双等位基因之间的AD和AR疾病分布存在显著差异。此外,在其余具有低SNP热点的常染色体中,其随机等位基因表达的CGI-和CGI+基因之间的AD和AR疾病也观察到了统计学上的显著差异。具体而言,AD疾病与CGI-基因相关,而AR疾病与CGI+基因相关。在X染色体中,无论X染色体失活过程如何,X连锁显性(XLD)疾病主要存在于CGI+基因中,而X连锁隐性(XLR)疾病存在于CGI-基因中。以比“显性”和“隐性”及其衍生物(如“共显性”和“不完全显性”)更随机的方式研究遗传并对遗传变异进行分类至关重要,这些术语在孟德尔和非孟德尔遗传中使用。这一概念可能进一步解释某些人类疾病中的“降低的外显率”和“可变表达”。上述所有情况表明需要重新评估如何研究和利用遗传和表观遗传数据进行遗传咨询或精准医学。