Sun Lei, Yang Wenqi, Li Lulu, Wang Daming, Zan Xinyi, Cui Fengjie, Qi Xianghui, Sun Ling, Sun Wenjing
School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, China.
Microorganisms. 2024 Dec 8;12(12):2530. doi: 10.3390/microorganisms12122530.
JUIM01 is an industrial 2-keto-d-gluconate (2KGA)-producing strain. However, its regulation mechanism of 2KGA metabolism remains to be clarified. Among other reported species, the 2-ketogluconate utilization operon ( operon) plays key roles in 2KGA catabolism. In this study, the structural genes of the operon and its promoter in JUIM01 were identified using reverse transcription PCR and reporter gene fusion. The results showed the operon in was composed of four structural genes: , , , and . The gene located upstream of was excluded from the operon. Then, the knockout and corresponding complementation strains of , , , and were constructed, respectively, to prove the operon was involved in 2KGA catabolism of . The knockout stains, especially JUIM01Δ, showed potential as industrial production strains for 2KGA. Moreover, the transcriptional regulation mechanism of PtxS on the operon was elucidated using multiple methods. In , the LacI-family transcription regulator PtxS could recognize a 14 bp palindrome (5'-TGAAACCGGTTTCA-3') within the promoter region of the operon and specifically bind to a 26 bp region where the palindrome was located. As the binding sites overlapped with the transcription start site of the operon, the binding of PtxS possibly hindered the binding of RNA polymerase, thus repressing the transcription of the operon and further regulating 2KGA catabolism. 2KGA bound to PtxS as an effector to dissociate it from the operon promoter region, so as to relieve the transcription repression. The results will provide strategies for improving the product accumulation in 2KGA industrial production and theoretical bases for the construction of a chassis.
JUIM01是一株工业生产2-酮基-D-葡萄糖酸(2KGA)的菌株。然而,其2KGA代谢的调控机制仍有待阐明。在其他已报道的物种中,2-酮基葡萄糖酸利用操纵子(operon)在2KGA分解代谢中起关键作用。在本研究中,利用逆转录PCR和报告基因融合技术鉴定了JUIM01中operon的结构基因及其启动子。结果表明,JUIM01中的operon由四个结构基因组成: 、 、 和 。位于 上游的 基因被排除在operon之外。然后,分别构建了 、 、 和 的敲除菌株及相应的互补菌株,以证明operon参与了JUIM01的2KGA分解代谢。敲除菌株,尤其是JUIM01Δ,显示出作为2KGA工业生产菌株的潜力。此外,还采用多种方法阐明了PtxS对operon的转录调控机制。在JUIM01中,LacI家族转录调节因子PtxS可以识别operon启动子区域内一个14 bp的回文序列(5'-TGAAACCGGTTTCA-3'),并特异性结合到该回文序列所在的26 bp区域。由于结合位点与operon的转录起始位点重叠,PtxS的结合可能会阻碍RNA聚合酶的结合,从而抑制operon的转录,进而调节2KGA的分解代谢。2KGA作为效应物与PtxS结合,使其从operon启动子区域解离,从而解除转录抑制。这些结果将为提高2KGA工业生产中的产物积累提供策略,并为构建底盘提供理论依据。