Polivtseva Valentina N, Zvonarev Anton N, Sazonova Olesya I, Delegan Yanina A, Kocharovskaya Yulia N, Bogun Alexander G, Suzina Nataliya E
Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center "Pushchino Scientific Center for Biological Research of Russian Academy of Sciences" (FRC PSCBR RAS), 142290 Pushchino, Russia.
Academy of Biology and Biotechnology Behalf D.I. Ivanovskyi, Southern Federal University, 344006 Rostov-on-Don, Russia.
Microorganisms. 2024 Dec 22;12(12):2662. doi: 10.3390/microorganisms12122662.
Phenol and its chlorinated derivatives are introduced into the environment with wastewater effluents from various industries, becoming toxic pollutants. Phenol-degrading bacteria are important objects of research; among them, representatives of the genus are often highlighted as promising. Strain 7Ba was isolated by enrichment culture. A new isolate was characterized using culturing, biochemistry, high-throughput sequencing, microscopy (including electron microscopy), and functional genome analysis. strain 7Ba is able to grow on phenol and chlorophenols without losing its properties during long-term storage. It was shown that strain 7Ba is able to form viable but nonculturable (VBNC) forms during long-term storage under nutrient limitation, preserving both cell viability and the ability to degrade phenols. The ultrastructural organization of the vegetative forms of cells and VBNC forms was characterized. The following distinctive features were found: modifications (thickening) of cell membranes, cell size reduction, nucleoid condensation. Functional analysis of the genome showed the presence of genes for the degradation of alkanes, and two branches of the β-ketoadipate pathway for the degradation of aromatic compounds. Also, the genome of strain 7Ba contains several copies of Rpf (resuscitation promoting factor) genes, a resuscitation factor of resting bacterial forms. The new isolate strain 7Ba is a promising biotechnological agent that can not only utilize toxic aromatic compounds but also remain viable during long-term storage. For this reason, its further application as an agent for bioremediation can be successful under changing conditions of climate and given the deficiency of nutrient compounds in nature. Minor biostimulation will allow the strain to recover its metabolic activity and effectively degrade pollution.
苯酚及其氯化衍生物通过来自各个行业的废水排放进入环境,成为有毒污染物。苯酚降解细菌是重要的研究对象;其中,该属的代表菌株常被视为有前景的菌株。菌株7Ba通过富集培养分离得到。利用培养、生物化学、高通量测序、显微镜检查(包括电子显微镜)和功能基因组分析对新分离的菌株进行了表征。菌株7Ba能够在苯酚和氯酚上生长,并且在长期储存过程中不会丧失其特性。结果表明,菌株7Ba在营养限制条件下长期储存期间能够形成活的但不可培养(VBNC)形式,同时保持细胞活力和降解苯酚的能力。对细胞营养形式和VBNC形式的超微结构组织进行了表征。发现了以下显著特征:细胞膜修饰(增厚)、细胞尺寸减小、类核凝聚。基因组功能分析表明存在烷烃降解基因以及芳香化合物降解的β-酮己二酸途径的两个分支。此外,菌株7Ba的基因组包含多个Rpf(复苏促进因子)基因拷贝,Rpf是静止细菌形式的复苏因子。新分离的菌株7Ba是一种有前景的生物技术制剂,它不仅可以利用有毒芳香化合物,而且在长期储存期间仍能保持活力。因此,在气候变化和自然界营养化合物缺乏的情况下,将其作为生物修复剂进一步应用可能会取得成功。轻微的生物刺激将使该菌株恢复其代谢活性并有效降解污染物。