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转录调控网络的深入推断揭示NPM1作为MYC扩增型髓母细胞瘤中的一种治疗性核糖体调节因子。

In-depth inference of transcriptional regulatory networks reveals NPM1 as a therapeutic ribosomal regulator in MYC-amplified medulloblastoma.

作者信息

Chen Tong, Chen Huiyao, Xia Mingyang, Liao Yunfei, Li Hao, Dong Xinran, Lin Yifeng, Zhou Wenhao

机构信息

Key Laboratory of Neonatal Disease, Ministry of Health, Children's Hospital of Fudan University, Shanghai, China.

Center for Molecular Medicine, Children's Hospital of Fudan University, Shanghai, China.

出版信息

NPJ Precis Oncol. 2025 Jan 10;9(1):10. doi: 10.1038/s41698-024-00792-7.

DOI:10.1038/s41698-024-00792-7
PMID:39794402
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11723958/
Abstract

Medulloblastoma (MB) is an aggressive pediatric brain tumor with distinct molecular heterogeneity. Identifying subtype-specific signatures within Group 3 and Group 4 remains challenging due to shared cytogenetic alterations and limitations of conventional differential gene expression analysis. To uncover the underlying molecular signatures and hidden regulators, we used the Cavalli transcriptomic profile of 470 Group 3 and Group 4 MB patients to reconstruct subtype-specific regulatory networks. A strong upregulation of the ribosomal pathway was linked to MYC amplification in Group 3, with Nucleophosmin 1 (NPM1) emerging as a key regulator. NPM1 upregulation defined a subset of Group3 and Group4 patients with poor prognosis. Inhibition of NPM1 led to apoptosis, reduced c-Myc stability, and impaired translation in MYC-amplified Group 3 MB cells. Together, our findings highlight NPM1 as a promising therapeutic target and provide new insights into the regulatory mechanisms in MB.

摘要

髓母细胞瘤(MB)是一种侵袭性儿童脑肿瘤,具有明显的分子异质性。由于存在共同的细胞遗传学改变以及传统差异基因表达分析的局限性,在3组和4组中识别亚型特异性特征仍然具有挑战性。为了揭示潜在的分子特征和隐藏的调节因子,我们利用470例3组和4组MB患者的卡瓦利转录组图谱来重建亚型特异性调控网络。核糖体途径的强烈上调与3组中的MYC扩增有关,核磷蛋白1(NPM1)成为关键调节因子。NPM1上调定义了3组和4组中预后不良的患者亚组。抑制NPM1导致MYC扩增的3组MB细胞凋亡、c-Myc稳定性降低和翻译受损。总之,我们的研究结果突出了NPM1作为一个有前景的治疗靶点,并为MB的调控机制提供了新的见解。

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本文引用的文献

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Mol Cell. 2024 Jan 18;84(2):261-276.e18. doi: 10.1016/j.molcel.2023.12.003. Epub 2024 Jan 3.
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NetBID2 provides comprehensive hidden driver analysis.NetBID2 提供全面的隐藏驱动程序分析。
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Nucleophosmin Plays a Role in Repairing DNA Damage and Is a Target for Cancer Treatment.核仁磷酸蛋白在修复 DNA 损伤中发挥作用,是癌症治疗的靶点。
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Loss of phosphatase CTDNEP1 potentiates aggressive medulloblastoma by triggering MYC amplification and genomic instability.磷酸酶 CTDNEP1 的缺失通过触发 MYC 扩增和基因组不稳定性增强侵袭性成神经管细胞瘤。
Nat Commun. 2023 Feb 10;14(1):762. doi: 10.1038/s41467-023-36400-8.
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Unified rhombic lip origins of group 3 and group 4 medulloblastoma.统一的 3 组和 4 组髓母细胞瘤菱形唇起源。
Nature. 2022 Sep;609(7929):1012-1020. doi: 10.1038/s41586-022-05208-9. Epub 2022 Sep 21.
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Current status and future perspectives in targeted therapy of NPM1-mutated AML.NPM1 突变型 AML 的靶向治疗的现状与展望。
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