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新型抗细菌4-哌嗪基喹啉杂合衍生物:设计、合成以及体外和计算机模拟研究

Novel Antibacterial 4-Piperazinylquinoline Hybrid Derivatives Against : Design, Synthesis, and In Vitro and In Silico Insights.

作者信息

La Monica Gabriele, Gallo Annamaria, Bono Alessia, Alamia Federica, Lauria Antonino, Alduina Rosa, Martorana Annamaria

机构信息

Department of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Viale delle Scienze, 90128 Palermo, Italy.

NBFC, National Biodiversity Future Center, Piazza Marina 61, 90133 Palermo, Italy.

出版信息

Molecules. 2024 Dec 25;30(1):28. doi: 10.3390/molecules30010028.

DOI:10.3390/molecules30010028
PMID:39795086
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11720749/
Abstract

Molecular hybridization, which consists of the combination of two or more pharmacophores into a single molecule, is an innovative approach in drug design to afford new chemical entities with enhanced biological activity. In the present study, this strategy was pursued to develop a new series of 6,7-dimethoxy-4-piperazinylquinoline-3-carbonitrile derivatives (-) with potential antibiotic activity by combining the quinoline, the piperazinyl, and the benzoylamino moieties, three recurrent frameworks in antimicrobial research. Initial in silico evaluations were conducted on the designed compounds, highlighting favorable ADMET and drug-likeness properties, which were synthesized through a multistep strategy, isolated, and fully characterized. The whole set was tested in vitro against ATCC 25923 and ATCC 10145 representative Gram-positive and Gram-negative strains, respectively. Notably, exhibited potent and selective activity against (MIC 10 μM), with a dose- and time-dependent response and capability to affect cell membrane integrity. On the other hand, no significant activity was observed against . Further in silico docking and molecular dynamics studies highlighted strong interactions of with bacterial enzymes, such as tyrosyl-tRNA synthetase, pyruvate kinase, and DNA gyrase B, suggesting potential modes of action. These findings underscore the value of the hybridization approach in producing new antimicrobial agents, guiding future optimization for broader-spectrum activity.

摘要

分子杂交是将两个或更多药效基团组合成单个分子的过程,是药物设计中的一种创新方法,用于提供具有增强生物活性的新化学实体。在本研究中,通过将喹啉、哌嗪基和苯甲酰氨基部分(抗菌研究中的三个常见骨架)组合,采用这种策略开发了一系列具有潜在抗生素活性的新型6,7-二甲氧基-4-哌嗪基喹啉-3-腈衍生物(-)。对设计的化合物进行了初步的计算机模拟评估,突出了良好的ADMET和类药性质,这些化合物通过多步策略合成、分离并进行了全面表征。整个系列分别针对ATCC 25923和ATCC 10145代表性革兰氏阳性和革兰氏阴性菌株进行了体外测试。值得注意的是,对(MIC 10 μM)表现出强效和选择性活性,具有剂量和时间依赖性反应以及影响细胞膜完整性的能力。另一方面,对未观察到显著活性。进一步的计算机模拟对接和分子动力学研究突出了与细菌酶(如酪氨酰-tRNA合成酶、丙酮酸激酶和DNA回旋酶B)的强相互作用,表明了潜在的作用模式。这些发现强调了杂交方法在生产新型抗菌剂方面的价值,为未来更广泛谱活性的优化提供了指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/0a57706bea56/molecules-30-00028-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/d1514096c4ee/molecules-30-00028-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/9a945498174a/molecules-30-00028-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/24dbb8f0c209/molecules-30-00028-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/19a6879df1c8/molecules-30-00028-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/06d8ade5d8e5/molecules-30-00028-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/c4541967da27/molecules-30-00028-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/c3372aa7fc47/molecules-30-00028-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/1c3ae167269e/molecules-30-00028-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/ede16e9b5335/molecules-30-00028-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/0a57706bea56/molecules-30-00028-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/d1514096c4ee/molecules-30-00028-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/9a945498174a/molecules-30-00028-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/24dbb8f0c209/molecules-30-00028-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/19a6879df1c8/molecules-30-00028-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/06d8ade5d8e5/molecules-30-00028-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/c4541967da27/molecules-30-00028-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/c3372aa7fc47/molecules-30-00028-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/1c3ae167269e/molecules-30-00028-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/ede16e9b5335/molecules-30-00028-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c1/11720749/0a57706bea56/molecules-30-00028-g009.jpg

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