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嗜极古菌Sulfolobus sp. SMAs-55中高抗锑性背后的基因组缺失与转录组重排

Genome Deletions and Rewiring of the Transcriptome Underlying High Antimonite Resistance in sp. SMAs-55.

作者信息

Yu Yanshuang, Herzberg Martin, Pat-Espadas Aurora M, Vinuesa Pablo, Feng Renwei, Rosen Barry, Amachi Seigo, Jia Xianbo, Rensing Christopher, Zhou Shungui

机构信息

College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

Institute of Resources, Environment and Soil Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou 350002, China.

出版信息

Int J Mol Sci. 2024 Dec 26;26(1):107. doi: 10.3390/ijms26010107.

DOI:10.3390/ijms26010107
PMID:39795967
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11719878/
Abstract

Microbes have been shown to adapt to stressful or even lethal conditions through displaying genome plasticity. However, how bacteria utilize the ability of genomic plasticity to deal with high antimony (Sb) stress has remained unclear. In this study, the spontaneous mutant strain SMAs-55 of sp. As-55 was obtained under antimonite (Sb(III)) stress. SMAs-55 displayed significantly increased Sb(III) resistance, but it lost the ability to oxidize arsenite (As(III)) by deleting an entire gene island containing genes encoding functions involved in As(III) oxidation, arsenic (As)/Sb resistance and phosphate transport. This study suggests that genetic plasticity has played an important role in As-55 adaption to Sb(III) stress. Transcriptomic analysis found that genes encoding functions involved in capsule polysaccharide synthesis, as well as functions correlated to stress adaptation, ATP production, and metabolism were more strongly expressed in SMAs-55. In addition, a lower intracellular Sb(III) accumulation in SMAs-55 was observed. These findings indicate that reduced uptake through increased capsule biosynthesis was an effective way for SMAs-55 to adapt to an environment displaying high levels of Sb. This study helps us to better understand the evolutionary processes enabling survival of microbes and microbial community in contaminated environments.

摘要

微生物已被证明可通过展现基因组可塑性来适应压力甚至致死条件。然而,细菌如何利用基因组可塑性能力来应对高锑(Sb)胁迫仍不清楚。在本研究中,在亚锑酸盐(Sb(III))胁迫下获得了sp. As-55的自发突变菌株SMAs-55。SMAs-55对Sb(III)的抗性显著增强,但通过缺失一个完整的基因岛而丧失了氧化亚砷(As(III))的能力,该基因岛包含编码与As(III)氧化、砷(As)/锑抗性及磷酸盐转运相关功能的基因。本研究表明,遗传可塑性在As-55适应Sb(III)胁迫中发挥了重要作用。转录组分析发现,编码参与荚膜多糖合成功能的基因,以及与应激适应、ATP产生和代谢相关的功能在SMAs-55中表达更强。此外,观察到SMAs-55细胞内Sb(III)积累较低。这些发现表明,通过增加荚膜生物合成减少摄取是SMAs-55适应高锑环境的有效方式。本研究有助于我们更好地理解使微生物和微生物群落能在受污染环境中生存的进化过程。

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本文引用的文献

1
A review on arsenic in the environment: contamination, mobility, sources, and exposure.环境中砷的综述:污染、迁移性、来源及暴露
RSC Adv. 2023 Mar 17;13(13):8803-8821. doi: 10.1039/d3ra00789h. eCollection 2023 Mar 14.
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Citrobacter portucalensis Sb-2 contains a metalloid resistance determinant transmitted by Citrobacter phage Chris1.波卡顿氏柠檬酸杆菌 Sb-2 含有一个由柠檬酸杆菌噬菌体 Chris1 传递的类金属抗性决定簇。
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ArsZ from Ensifer adhaerens ST2 is a novel methylarsenite oxidase.
来自坚韧放线菌 ST2 的 ArsZ 是一种新型的亚砷酸盐氧化酶。
Environ Microbiol. 2022 Jul;24(7):3013-3021. doi: 10.1111/1462-2920.15983. Epub 2022 Apr 18.
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ArsV and ArsW provide synergistic resistance to the antibiotic methylarsenite. ArsV 和 ArsW 协同抵抗抗生素甲基砷酸盐。
Environ Microbiol. 2021 Dec;23(12):7550-7562. doi: 10.1111/1462-2920.15817. Epub 2021 Oct 21.
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Antimony contamination and its risk management in complex environmental settings: A review.锑污染及其在复杂环境中的风险管理:综述。
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Oxidation of organoarsenicals and antimonite by a novel flavin monooxygenase widely present in soil bacteria.新型黄素单加氧酶普遍存在于土壤细菌中,可氧化有机胂和亚锑酸盐。
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Genetic Identification of Antimonate Respiratory Reductase in sp. ANA-3.sp. ANA-3 中抗坏血酸盐呼吸还原酶的遗传鉴定。
Environ Sci Technol. 2020 Nov 3;54(21):14107-14113. doi: 10.1021/acs.est.0c03875. Epub 2020 Oct 15.
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Improved grain yield and lowered arsenic accumulation in rice plants by inoculation with arsenite-oxidizing Achromobacter xylosoxidans GD03.通过接种亚砷酸盐氧化菌 GD03(Achromobacter xylosoxidans GD03)提高水稻的谷物产量并降低砷积累。
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