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全基因组鉴定揭示了耐热性的潜在候选基因——中的热休克转录因子基因家族

Genome-Wide Characterization of the Heat Shock Transcription Factor Gene Family in Reveals Promising Candidates for Heat Tolerance.

作者信息

Guo Shengzhou, Chen Hao, Wu Hongwei, Xu Zuyuan, Yang Hao, Lin Qinmin, Feng Hanyu, Zeng Zilu, Wang Sanjiao, Liu Haolin, Liu Xiaomin, Cao Shijiang, Wang Kang

机构信息

College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

College of Computer Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Int J Mol Sci. 2024 Dec 28;26(1):172. doi: 10.3390/ijms26010172.

DOI:10.3390/ijms26010172
PMID:39796031
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11720272/
Abstract

Heat stress transcription factors (HSFs) play a critical role in orchestrating cellular responses to elevated temperatures and various stress conditions. While extensively studied in model plants, the gene family in remains unexplored, despite the availability of its sequenced genome. In this study, we employed bioinformatics approaches to identify 21 genes within the genome, revealing their uneven distribution across chromosomes. These genes were categorized into three subfamilies: A, B, and C. Each was characterized by conserved protein motifs and gene structures, with notable divergence observed between subfamilies. Collinearity analysis suggested that segmental duplication events have driven the evolutionary expansion of the gene family. Promoter region analysis identified an array of cis-acting elements linked to growth, development, hormonal regulation, and stress responses. Subcellular localization experiments confirmed the nuclear localization of , , and , consistent with in silico predictions. RNA-seq and RT-qPCR analyses revealed tissue-specific expression patterns of genes and their dynamic responses to heat stress, with qPCR validation highlighting a significant upregulation of under high-temperature conditions. In summary, this study provided a comprehensive characterization of the gene family in , laying a solid foundation for future functional studies. Particularly, emerges as a promising candidate gene for enhancing heat tolerance in , warranting further detailed investigation.

摘要

热应激转录因子(HSFs)在协调细胞对高温和各种应激条件的反应中起着关键作用。虽然在模式植物中已被广泛研究,但尽管已有其测序基因组,[具体物种]中的该基因家族仍未被探索。在本研究中,我们采用生物信息学方法在[具体物种]基因组中鉴定出21个[具体物种]基因,揭示了它们在染色体上的分布不均。这些基因被分为三个亚家族:A、B和C。每个亚家族都具有保守的蛋白质基序和基因结构,亚家族之间存在明显差异。共线性分析表明,片段重复事件推动了[具体物种]基因家族的进化扩张。启动子区域分析确定了一系列与生长、发育、激素调节和应激反应相关的顺式作用元件。亚细胞定位实验证实了[具体基因1]、[具体基因2]和[具体基因3]的核定位,与计算机预测结果一致。RNA测序和逆转录定量PCR分析揭示了[具体物种]基因的组织特异性表达模式及其对热应激的动态反应,定量PCR验证突出了在高温条件下[具体基因4]的显著上调。总之,本研究对[具体物种]中的[具体物种]基因家族进行了全面表征,为未来的功能研究奠定了坚实基础。特别是,[具体基因]成为提高[具体物种]耐热性的一个有前景的候选基因,值得进一步详细研究。

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