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干旱胁迫下的GAPDH基因家族:全基因组鉴定、结构分析及表达分析

GAPDH Gene Family in : Genome-Wide Identification, Structural Analysis, and Expression Analysis Under Drought Stress.

作者信息

Lim Hyemin, Denison Michael Immanuel Jesse, Natarajan Sathishkumar, Lee Kyungmi, Oh Changyoung, Park Danbe

机构信息

Department of Forest Bioresources, National Institute of Forest Science, Suwon 16631, Republic of Korea.

3BIGS Company Limited, Hwaseong 18469, Republic of Korea.

出版信息

Int J Mol Sci. 2025 Jan 2;26(1):335. doi: 10.3390/ijms26010335.

Abstract

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is an enzyme widely involved in glycolysis in animal cells and in non-metabolic processes, including apoptosis and the regulation of gene expression. GAPDH is a ubiquitous protein that plays a pivotal role in plant metabolism and handling of stress responses. However, its function in plant stress resistance remains unknown. Identification and systematic analysis of the GAPDH family in () have not been performed. Bioinformatics methods were used to analyze the physicochemical characteristics, structural characteristics, phylogenetic relationships, gene structure, motif analysis, and expression of gene family members in . We identified 12 GAPDH members in . Five types of were identified: , , , , and . genes were differentially expressed in leaves, stems, and roots of 1-year-old poplar seedlings. gene transcripts showed that and were highly expressed in the leaves. In the roots, seven genes-, , , , , , and -showed significantly high expression levels. , , , and showed decreased expression under drought conditions and recovered after re-watering. These results lay the foundation for further studies on the drought stress mechanisms of

摘要

甘油醛-3-磷酸脱氢酶(GAPDH)是一种广泛参与动物细胞糖酵解以及包括细胞凋亡和基因表达调控在内的非代谢过程的酶。GAPDH是一种普遍存在的蛋白质,在植物代谢和应激反应处理中起关键作用。然而,其在植物抗逆性中的功能仍不清楚。尚未对()中的GAPDH家族进行鉴定和系统分析。利用生物信息学方法分析了()中基因家族成员的理化特性、结构特征、系统发育关系、基因结构、基序分析和表达情况。我们在()中鉴定出12个GAPDH成员。鉴定出了五种类型的():()、()、()、()和()。()基因在1年生杨树幼苗的叶、茎和根中差异表达。()基因转录本显示()和()在叶片中高表达。在根中,七个基因——()、()、()、()、()、()和()——显示出显著的高表达水平。()、()、()和()在干旱条件下表达下降,复水后恢复。这些结果为进一步研究()的干旱胁迫机制奠定了基础

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82da/11720025/e4fdf0bdedd6/ijms-26-00335-g001.jpg

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