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用于研究细菌群落内竞争相互作用的新兴模型。

Emerging models to study competitive interactions within bacterial communities.

作者信息

Virgo Mollie, Mostowy Serge, Ho Brian T

机构信息

Institute of Structural and Molecular Biology, Department of Biological Sciences, Birkbeck College, London, UK; Department of Infection Biology, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK.

Department of Infection Biology, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK.

出版信息

Trends Microbiol. 2025 Jun;33(6):688-700. doi: 10.1016/j.tim.2024.12.009. Epub 2025 Jan 10.

Abstract

Within both abiotic and host environments, bacteria typically exist as diverse, multispecies communities and have crucial roles in human health, agriculture, and industry. In these communities, bacteria compete for resources, and these competitive interactions can shape the overall population structure and community function. Studying bacterial community dynamics requires experimental model systems that capture the different interaction networks between bacteria and their surroundings. We examine the recent literature advancing such systems, including (i) in silico models establishing the theoretical basis for how cell-to-cell interactions can influence population level dynamics, (ii) in vitro models characterizing specific interbacterial interactions, (iii) organ-on-a-chip models revealing the physiologically relevant parameters, such as spatial structure and mechanical forces, that bacteria encounter within a host, and (iv) in vivo plant and animal models connecting the host responses to interbacterial interactions. Each of these systems has greatly contributed to our understanding of bacterial community dynamics and can be used synergistically to understand how bacterial competition influences population architecture.

摘要

在非生物环境和宿主环境中,细菌通常以多样的多物种群落形式存在,并在人类健康、农业和工业中发挥着关键作用。在这些群落中,细菌会争夺资源,而这些竞争相互作用会塑造整体种群结构和群落功能。研究细菌群落动态需要实验模型系统来捕捉细菌与其周围环境之间不同的相互作用网络。我们审视了推动此类系统发展的近期文献,包括:(i)计算机模型,为细胞间相互作用如何影响种群水平动态建立理论基础;(ii)体外模型,表征特定的细菌间相互作用;(iii)芯片器官模型,揭示细菌在宿主体内遇到的生理相关参数,如空间结构和机械力;(iv)体内植物和动物模型,将宿主反应与细菌间相互作用联系起来。这些系统中的每一个都极大地促进了我们对细菌群落动态的理解,并且可以协同使用,以了解细菌竞争如何影响种群结构。

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