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通过计算机辅助药物设计开发新型Lin28抑制剂。

Developing novel Lin28 inhibitors by computer aided drug design.

作者信息

Matias-Barrios Victor M, Radaeva Mariia, Rosellinny Graciella, Jia Qiongqiong, Xie Ning, Villanueva Monica, Ibrahim Hanadi, Smith Jason, Gleave Martin, Lallous Nada, Straus Suzana K, Cherkasov Artem, Dong Xuesen

机构信息

The Vancouver Prostate Centre, Department of Urologic Sciences, University of British Columbia, 2660 Oak Street, Vancouver, BC, V6H 3Z6, Canada.

Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC, V6T 1Z1, Canada.

出版信息

Cell Death Discov. 2025 Jan 12;11(1):5. doi: 10.1038/s41420-024-02281-z.

DOI:10.1038/s41420-024-02281-z
PMID:39800739
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11725581/
Abstract

Lin28 is a key regulator of cancer stem cell gene network that promotes therapy-resistant tumor progression in various tumors. However, no Lin28 inhibitor has been approved to treat cancer patients, urging exploration of novel compounds as candidates to be tested for clinical trials. In this contribution, we applied computer-aided drug design (CADD) in combination with quantitative biochemical and biological assays. These efforts led to the discovery of Ln268 as a drug candidate that can block Lin28 from binding to its RNA substrates and inhibit Lin28 activities. Ln268 suppressed Lin28-mediated cancer cell proliferation and spheroid growth. Results from nuclear magnetic resonance spectroscopy confirmed that Ln268 perturbs the conformation of the zinc knuckle domain of Lin28, validating the rational drug design by CADD. The inhibitory effects of Ln268 are dependent on Lin28 protein expression in cancer cells, highlighting limited off-target effects of Ln268. Moreover, Ln268 synergizes with several chemotherapy drugs to suppress tumor cell growth. In summary, Ln268 is a promising candidate for further development to target Lin28 as a cancer therapy.

摘要

Lin28是癌症干细胞基因网络的关键调节因子,可促进多种肿瘤中抗治疗性肿瘤进展。然而,尚无Lin28抑制剂被批准用于治疗癌症患者,这促使人们探索新型化合物作为临床试验的候选药物进行测试。在本研究中,我们将计算机辅助药物设计(CADD)与定量生化和生物学分析相结合。这些努力导致发现了Ln268作为一种候选药物,它可以阻止Lin28与其RNA底物结合并抑制Lin28活性。Ln268抑制了Lin28介导的癌细胞增殖和球体生长。核磁共振光谱结果证实,Ln268扰乱了Lin28锌指结构域的构象,验证了CADD的合理药物设计。Ln268的抑制作用取决于癌细胞中Lin28蛋白的表达,突出了Ln268有限的脱靶效应。此外,Ln268与几种化疗药物协同作用以抑制肿瘤细胞生长。总之,Ln268是作为癌症治疗靶向Lin28的有前景的进一步开发候选药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/72147ef97c30/41420_2024_2281_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/09f54ca01ce5/41420_2024_2281_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/2c3aa87297fd/41420_2024_2281_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/fd3fb0cbec0f/41420_2024_2281_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/497ff938698c/41420_2024_2281_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/17ceec482f19/41420_2024_2281_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/72147ef97c30/41420_2024_2281_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/09f54ca01ce5/41420_2024_2281_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/2c3aa87297fd/41420_2024_2281_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/fd3fb0cbec0f/41420_2024_2281_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/497ff938698c/41420_2024_2281_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/17ceec482f19/41420_2024_2281_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca4e/11725581/72147ef97c30/41420_2024_2281_Fig6_HTML.jpg

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Nat Rev Chem. 2020 Sep;4(9):441-458. doi: 10.1038/s41570-020-0201-4. Epub 2020 Jul 15.
3
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Cancers (Basel). 2022 Nov 19;14(22):5687. doi: 10.3390/cancers14225687.
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Lin28 Regulates Cancer Cell Stemness for Tumour Progression.Lin28调控癌细胞干性以促进肿瘤进展。
Cancers (Basel). 2022 Sep 24;14(19):4640. doi: 10.3390/cancers14194640.
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Optimization of New Catalytic Topoisomerase II Inhibitors as an Anti-Cancer Therapy.新型催化拓扑异构酶II抑制剂作为抗癌疗法的优化
Cancers (Basel). 2021 Jul 22;13(15):3675. doi: 10.3390/cancers13153675.
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Lin28, a major translation reprogramming factor, gains access to YB-1-packaged mRNA through its cold-shock domain.Lin28,一种主要的翻译重编程因子,通过其冷休克结构域获得与 YB-1 结合的 mRNA。
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