农业基因组学研究中的数据重用：挑战与建议。

Data reuse in agricultural genomics research: challenges and recommendations.

作者信息

Hafner Alenka, DeLeo Victoria, Deng Cecilia H, Elsik Christine G, S Fleming Damarius, Harrison Peter W, Kalbfleisch Theodore S, Petry Bruna, Pucker Boas, Quezada-Rodríguez Elsa H, Tuggle Christopher K, Koltes James E

机构信息

Department of Biology, Frear North, Pennsylvania State University, University Park, PA, 16802, US.

Intercollege Graduate Degree Program in Plant Biology, Pennsylvania State University, University Park, PA, 16802, US.

出版信息

Gigascience. 2025 Jan 6;14. doi: 10.1093/gigascience/giae106.

DOI:10.1093/gigascience/giae106

PMID:39804724

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11727710/

Abstract

The scientific community has long benefited from the opportunities provided by data reuse. Recognizing the need to identify the challenges and bottlenecks to reuse in the agricultural research community and propose solutions for them, the data reuse working group was started within the AgBioData consortium framework. Here, we identify the limitations of data standards, metadata deficiencies, data interoperability, data ownership, data availability, user skill level, resource availability, and equity issues, with a specific focus on agricultural genomics research. We propose possible solutions stakeholders could implement to mitigate and overcome these challenges and provide an optimistic perspective on the future of genomics and transcriptomics data reuse.

摘要

长期以来，科学界一直受益于数据复用所带来的机遇。认识到有必要识别农业研究领域数据复用的挑战和瓶颈，并为其提出解决方案，数据复用工作组在农业生物数据联盟框架内成立。在此，我们确定了数据标准的局限性、元数据缺陷、数据互操作性、数据所有权、数据可用性、用户技能水平、资源可用性和平等问题，特别关注农业基因组学研究。我们提出了利益相关者可以实施的可能解决方案，以减轻和克服这些挑战，并对基因组学和转录组学数据复用的未来提供了乐观的展望。