Lian Tianhao, Iloanya Anthony, Kastuar Srihari, Tayo Benjamin O, Ekuma Chinedu
Department of Physics, Lehigh University, Bethlehem, Pennsylvania 18015, United States.
School of Engineering, University of Central Oklahoma, Edmond, Oklahoma 73034, United States.
ACS Omega. 2024 Dec 31;10(1):1094-1099. doi: 10.1021/acsomega.4c08550. eCollection 2025 Jan 14.
DNA nucleobases are important in DNA sequencing, disease testing linked to genes, and disease treatment. Here, we report density functional calculations investigating the adsorption of guanine (G), adenine (A), thymine (T), and cytosine (C) on armchair graphene nanoribbons (AGNR) - a gapped semiconductor. Their adsorption energies, charge transfer, work function, and electrical properties were calculated. The adsorption strength and charge transfer demonstrate a physisorption mechanism for the nucleobases on AGNR. The adsorption strength between -0.58 and -0.73 eV has a hierarchy of . Although the energy gap remained unchanged, the variations in the density of states of the nucleobases correspond with the concentration of electronegative atoms present in the nucleobases. The sensitivity of AGNR to the nucleobases is differentiated by the degree of hybridization of the -orbitals shown in the density of states. The changes in the work function illustrate a p-type sensing mechanism that correlates with the charge transfer mechanism from the substrate to the nucleobases. Our findings emphasize the capability of AGNR as a real-time sensor for DNA nucleobases owing to the physisorption mechanism and small recovery time of the AGNR to its baseline state after every detection event.
DNA核碱基在DNA测序、与基因相关的疾病检测及疾病治疗中都很重要。在此,我们报告了密度泛函计算结果,该计算研究了鸟嘌呤(G)、腺嘌呤(A)、胸腺嘧啶(T)和胞嘧啶(C)在扶手椅型石墨烯纳米带(AGNR,一种带隙半导体)上的吸附情况。我们计算了它们的吸附能、电荷转移、功函数和电学性质。吸附强度和电荷转移表明核碱基在AGNR上的吸附机制为物理吸附。吸附强度在-0.58至-0.73电子伏特之间,存在一定的层级关系。尽管能隙保持不变,但核碱基态密度的变化与核碱基中电负性原子的浓度相对应。AGNR对核碱基的敏感性通过态密度中所示的-轨道杂化程度来区分。功函数的变化说明了一种p型传感机制,该机制与从基底到核碱基的电荷转移机制相关。我们的研究结果强调了AGNR作为DNA核碱基实时传感器的能力,这是由于其物理吸附机制以及每次检测事件后AGNR恢复到基线状态的恢复时间较短。