Lobanova Yaroslava, Mazur Alexander, Kaplun Daria, Prokchortchouk Egor, Zhenilo Svetlana
Federal Research Centre «Fundamentals of Biotechnology», Russian Academy of Sciences, Moscow, Russia, 119071.
Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia, 119334.
Mol Biol Rep. 2025 Jan 23;52(1):153. doi: 10.1007/s11033-025-10257-0.
TRIM28 plays a crucial role in maintaining genomic stability and establishing imprinting, facilitated by the diversity of KRAB zinc finger proteins. The SUMOylation of TRIM28 is essential for its function and is enhanced in the presence of the KRAB domain. Previously, we demonstrated that Kaiso, another factor capable of interacting with TRIM28, can promote its SUMOylation. Here we investigate which structural elements of Kaiso are necessary for the hyper-SUMOylation of TRIM28.
We found that the SUMO-interacting motifs (SIMs) of Kaiso are not responsible for TRIM28 SUMOylation. The SUMOylation of individual TRIM28 domains in the presence of Kaiso was not observed, suggesting the importance of TRIM28's structural integrity for this process. The Kaiso BTB/POZ domain, but not its closest homolog ZBTB4, is sufficient for the effective hyper-SUMOylation of TRIM28. Also, using single-cell sequencing data of mouse embryos, we identified cells in which co-expression of Kaiso and TRIM28 occurs, including the immune system, nervous system and various epithelial cells.
BTB/POZ domain of Kaiso may function similarly to KRAB domains in its interaction with TRIM28 regulating its SUMOylation.
TRIM28在维持基因组稳定性和建立印记方面起着关键作用,这一过程由KRAB锌指蛋白的多样性所促进。TRIM28的SUMO化修饰对其功能至关重要,并且在KRAB结构域存在时会增强。此前,我们证明了另一个能够与TRIM28相互作用的因子Kaiso可以促进其SUMO化修饰。在此,我们研究Kaiso的哪些结构元件对于TRIM28的超SUMO化修饰是必需的。
我们发现Kaiso的SUMO相互作用基序(SIMs)对TRIM28的SUMO化修饰没有作用。在有Kaiso存在的情况下,未观察到单个TRIM28结构域的SUMO化修饰,这表明TRIM28的结构完整性在这一过程中的重要性。Kaiso的BTB/POZ结构域,而非其最接近的同源物ZBTB4,足以实现TRIM28有效的超SUMO化修饰。此外,利用小鼠胚胎的单细胞测序数据,我们鉴定出了同时表达Kaiso和TRIM28的细胞,包括免疫系统、神经系统和各种上皮细胞。
Kaiso的BTB/POZ结构域在与TRIM28相互作用调节其SUMO化修饰方面可能与KRAB结构域发挥类似的功能。