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基于双(苯并恶唑)的过度拥挤烯烃动力学的计算研究

Computational Study on the Dynamics of a Bis(benzoxazole)-Based Overcrowded Alkene.

作者信息

Stindt Charlotte N, Jo Taegeun, Steen Jorn D, Feringa Ben L, Crespi Stefano

机构信息

Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, Groningen 9747 AG, the Netherlands.

Department of Chemistry - Ångström Laboratory, Uppsala University, Box 523, Uppsala 751 20, Sweden.

出版信息

J Phys Chem A. 2025 Feb 6;129(5):1301-1309. doi: 10.1021/acs.jpca.4c06773. Epub 2025 Jan 23.

Abstract

Understanding and controlling molecular motions is of pivotal importance for designing molecular machinery and functional molecular systems, capable of performing complex tasks. Herein, we report a comprehensive theoretical study to elucidate the dynamic behavior of a bis(benzoxazole)-based overcrowded alkene displaying several coupled and uncoupled molecular motions. The benzoxazole moieties give rise to 4 different stable conformers that interconvert through single-bond rotations. By performing excited- and ground-state molecular dynamics simulations, DFT calculations, and NMR studies, we found that the photochemical isomerization of the central double bond of each stable conformer is directional and leads to a mixture of metastable isomers. This transformation is analogous to the classical Feringa-type molecular motors, with the notable difference that, during the photochemical isomerization and the subsequent thermal helix inversion (THI) steps, multiple possible pathways take place that involve single-bond rotations that can be both coupled and uncoupled to the rotation of the naphthyl half of the molecule.

摘要

理解和控制分子运动对于设计能够执行复杂任务的分子机器和功能性分子系统至关重要。在此,我们报告了一项全面的理论研究,以阐明基于双(苯并恶唑)的过度拥挤烯烃的动态行为,该烯烃表现出几种耦合和非耦合的分子运动。苯并恶唑部分产生4种不同的稳定构象异构体,它们通过单键旋转相互转化。通过进行激发态和基态分子动力学模拟、密度泛函理论(DFT)计算和核磁共振(NMR)研究,我们发现每个稳定构象异构体的中心双键的光化学异构化是有方向性的,并导致亚稳异构体的混合物。这种转变类似于经典的费林加型分子马达,显著的区别在于,在光化学异构化和随后的热螺旋反转(THI)步骤中,会发生多种可能的途径,这些途径涉及单键旋转,这些单键旋转可以与分子萘基部分的旋转耦合或不耦合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fa8/11808780/a39d1a24f06f/jp4c06773_0001.jpg

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