Vignati Zulemara B M, Teixeira Gisele A, Cunha Marina S, Pereira Jaqueline A, Lopes Denilce M
Laboratório de Citogenética de Insetos, Departamento de Biologia Geral, Universidade Federal de Viçosa, Campus Universitário, Viçosa 36570-900, Minas Gerais, Brazil.
Instituto de Veterinária, Universidade Federal Rural do Rio de Janeiro, Campus Seropédica, Seropédica 23891-970, Rio de Janeiro, Brazil.
Genes (Basel). 2025 Jan 15;16(1):86. doi: 10.3390/genes16010086.
BACKGROUND/OBJECTIVES: A striking feature of the karyotypes of stingless bees is the large amount of heterochromatin present in most species. Cytogenomic studies performed in some Meliponini species have suggested that evolutionary events related to the diversification and amplification of satellite DNA families in the heterochromatin may reflect the structuring of phylogenetic clades in this tribe. In this study, we performed a genomic analysis in to characterize different satDNA families in its genome. We also investigated the presence of the most abundant satDNA family of in its own chromosomes, in two other species, and in other Meliponini genera encompassing the three main clades of Neotropical Meliponini, according to the available molecular phylogeny.
Genomic analyses were performed using RepeatExplorer2 on the Galaxy platform, and chromosomal investigations were conducted using fluorescent in situ hybridization.
Seven satDNA families were recovered, which together totaled an abundance of 11.223% of the analyzed genomic fraction. The most abundant satDNA family, FvarSat01-306, predominates in the analyzed repetitive fraction (representing around 89%) and was recently amplified and homogenized in almost all the heterochromatin of . In addition, the data revealed an unprecedented sharing of this satDNA family in the centromeric/pericentromeric heterochromatin among different Meliponini genera, with independent amplifications and loss of this sequence in some taxa.
One family of satellite DNA makes up most of the heterochromatin in this species and is shared with other Meliponini.
背景/目的:无刺蜂核型的一个显著特征是大多数物种中存在大量异染色质。在一些无刺蜂属物种中进行的细胞基因组学研究表明,与异染色质中卫星DNA家族的多样化和扩增相关的进化事件可能反映了该部落系统发育分支的结构。在本研究中,我们对[物种名称]进行了基因组分析,以表征其基因组中的不同卫星DNA家族。我们还根据现有的分子系统发育,研究了[物种名称]中最丰富的卫星DNA家族在其自身染色体、另外两个[物种名称]物种以及涵盖新热带无刺蜂属三个主要分支的其他无刺蜂属中的存在情况。
使用Galaxy平台上的RepeatExplorer2进行基因组分析,并使用荧光原位杂交进行染色体研究。
共鉴定出7个卫星DNA家族,它们在分析的[物种名称]基因组部分中总计占比11.223%。最丰富的卫星DNA家族FvarSat01 - 306在分析的重复部分中占主导地位(约占89%),并且最近在[物种名称]的几乎所有异染色质中进行了扩增和同质化。此外,数据显示该卫星DNA家族在不同无刺蜂属的着丝粒/近着丝粒异染色质中存在前所未有的共享,在一些分类群中该序列有独立的扩增和缺失。
一个卫星DNA家族构成了该物种大部分的异染色质,并与其他无刺蜂属共享。