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从圈养蛇类中分离出的[具体内容未给出]的检测及全基因组特征

Detection and Whole-Genome Characteristics of Isolated from Captive Snakes.

作者信息

Zając Magdalena, Bona Inga, Skarżyńska Magdalena, Kwit Renata, Lalak Anna, Skrzypiec Ewelina, Mikos-Wojewoda Emilia, Pasim Paulina, Wojdat Dominika, Koza Weronika, Wasyl Dariusz

机构信息

Department of Microbiology, National Veterinary Research Institute, 24-100 Pulawy, Poland.

出版信息

Pathogens. 2025 Jan 9;14(1):49. doi: 10.3390/pathogens14010049.

Abstract

is a rare member of the genus , primarily associated with human wound infections rather than respiratory diseases. The bacterium has been isolated from various clinical specimens, including ear inflammatory discharge, diabetic ulcers, and chronic wounds. The study aimed to characterize the genomes and antimicrobial resistance (AMR) profiles of obtained from the fecal samples of asymptomatic highland eyelash pit vipers (). The identification was conducted using MALDI-TOF mass spectrometry and biochemical tests. AMR was assessed using the microbroth dilution method, while whole-genome sequencing was performed on the Illumina NextSeq platform. The isolates displayed characteristic biochemical features and demonstrated a resistance to cefotaxime, ciprofloxacin, and trimethoprim, while one also exhibited a resistance to ceftazidime. The whole-genome sequencing and comparison with limited public data revealed a high diversity within , reaching >48,000 single nucleotide polymorphisms (SNPs), with 64 SNP differentiating tested snake isolates and thus, being considered epidemiologically unrelated. This is the first report of isolated from an animal source in Europe. The findings provide valuable insights into this rare bacterium's phenotypic and genomic characteristics, addressing an important knowledge gap in its ecology and AMR profile.

摘要

是该属的一个罕见成员,主要与人类伤口感染相关,而非呼吸道疾病。该细菌已从各种临床标本中分离出来,包括耳部炎性分泌物、糖尿病溃疡和慢性伤口。该研究旨在对从无症状高地睫毛蝰蛇的粪便样本中获得的 的基因组和抗菌药物耐药性(AMR)谱进行表征。使用基质辅助激光解吸电离飞行时间质谱(MALDI-TOF)和生化试验进行鉴定。使用微量肉汤稀释法评估AMR,同时在Illumina NextSeq平台上进行全基因组测序。分离株显示出特征性的生化特征,并对头孢噻肟、环丙沙星和甲氧苄啶耐药,而其中一株还对头孢他啶耐药。全基因组测序以及与有限的公开数据比较显示, 内具有高度多样性,单核苷酸多态性(SNP)超过48000个,有64个SNP区分了受试的蛇分离株,因此被认为在流行病学上不相关。这是欧洲首次从动物源分离出 的报告。这些发现为这种罕见细菌的表型和基因组特征提供了有价值的见解,填补了其生态学和AMR谱方面的重要知识空白。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c9b/11768120/810805d2300c/pathogens-14-00049-g001.jpg

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