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卤键的本质:来自相互作用量子原子和源函数研究的见解。

The nature of halogen bonding: insights from interacting quantum atoms and source function studies.

作者信息

Pisati Arianna, Forni Alessandra, Pieraccini Stefano, Sironi Maurizio

机构信息

Department of Pharmaceutical Sciences, Università degli Studi di Milano, via Mangiagalli 25, 20133 Milano, Italy.

CNR-SCITEC, Institute of Chemical Sciences and Technologies `Giulio Natta' and INSTM RU, via Golgi 19, 20133 Milano, Italy.

出版信息

IUCrJ. 2025 Mar 1;12(Pt 2):188-197. doi: 10.1107/S2052252525000363.

DOI:10.1107/S2052252525000363
PMID:39869455
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11878453/
Abstract

A detailed study of the X...N (X = I, Br) halogen bonds in complexes formed by an extended set of substituted pyridines with D-X molecules (D = X, CN) is reported here. The nature of these interactions has been investigated at different (MP2 and DFT) levels of theory through Bader's quantum theory of atoms in molecules (QTAIM) and Pendás' interacting quantum atoms (IQA) scheme, focusing on the role of the local environment (i.e. the substituent on the pyridine ring and the halogenated residue) on the halogen bond features. We found that the exchange-correlation energy represents a substantial contribution to the IQA total energy, in some cases comparable to (I complexes) or even dominating (ICN complexes) the electrostatic term. Meaningful information is provided by the source function, indicating that the major contribution to the electron density at the bond critical point of the X...N interaction is derived from the halogen atom, while a much lower contribution comes from the nitrogen atom, which acts as either source or sink for electron density. A relevant contribution from distal atoms, including the various electron-donor and electron-withdrawing substituents in different positions of the pyridine ring, is also determined, highlighting the non-local character of the electron density. The existence of possible relationships between binding energies, interaction energies according to IQA, and QTAIM descriptors such as delocalization indices and source function, has been inspected. In general, good correlations are only found when the local environment, external to the directly involved halogen and nitrogen atoms, plays a minor role in the interaction.

摘要

本文报道了对一系列取代吡啶与D-X分子(D = X,CN)形成的配合物中X...N(X = I,Br)卤素键的详细研究。通过巴德的分子中原子量子理论(QTAIM)和彭达斯的相互作用量子原子(IQA)方案,在不同的理论水平(MP2和DFT)上研究了这些相互作用的本质,重点关注局部环境(即吡啶环上的取代基和卤化残基)对卤素键特征的作用。我们发现,交换相关能对IQA总能量有很大贡献,在某些情况下与静电项相当(I配合物),甚至在某些情况下占主导地位(ICN配合物)。源函数提供了有意义的信息,表明X...N相互作用的键临界点处电子密度的主要贡献来自卤素原子,而氮原子的贡献要低得多,氮原子充当电子密度的源或汇。还确定了远端原子的相关贡献,包括吡啶环不同位置的各种供电子和吸电子取代基,突出了电子密度的非局部特征。研究了结合能、根据IQA的相互作用能与QTAIM描述符(如离域指数和源函数)之间可能存在的关系。一般来说,只有当直接涉及的卤素和氮原子之外的局部环境在相互作用中起次要作用时,才会发现良好的相关性。

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Hydrogen bond types which do not fit accepted definitions.不符合公认定义的氢键类型。
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Revisiting conventional noncovalent interactions towards a complete understanding: from tetrel to pnicogen, chalcogen, and halogen bond.重新审视传统非共价相互作用以实现全面理解:从碳族元素到氮族、氧族和卤键。
RSC Adv. 2023 Oct 27;13(45):31507-31517. doi: 10.1039/d3ra06078k. eCollection 2023 Oct 26.
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Halogen bonds, chalcogen bonds, pnictogen bonds, tetrel bonds and other σ-hole interactions: a snapshot of current progress.卤键、硫属键、磷属键、拟卤键和其他 σ-空穴相互作用:当前进展概览。
Acta Crystallogr C Struct Chem. 2023 Jun 1;79(Pt 6):204-216. doi: 10.1107/S2053229623004072. Epub 2023 May 22.
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