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胃癌中的细胞异质性和通讯网络:单细胞分析揭示β-羟基丁酰化相关基因及免疫浸润特征

Cellular heterogeneity and communication networks in gastric cancer: Single-cell analysis reveals β-hydroxybutyrylation-associated genes and immune infiltration characteristics.

作者信息

Hu You, Xu Jun, Lv Jian, Qin Yan, Lu Yongda, Cen Fan, Yang Hongbao, Chen Kai, Xia Suhua

机构信息

Department of General Surgery, The First Affiliated Hospital of Soochow University, 899 Pinghai Road, Suzhou, 215006, Jiangsu, PR China.

Department of Gastroenterology, The First Affiliated Hospital of Soochow University, 899 Pinghai Road, Suzhou, 215006, Jiangsu, PR China.

出版信息

Transl Oncol. 2025 Mar;53:102270. doi: 10.1016/j.tranon.2025.102270. Epub 2025 Jan 29.

DOI:10.1016/j.tranon.2025.102270
PMID:39884220
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11830287/
Abstract

Gastric cancer is characterized by high heterogeneity, with its complex microenvironment and intercellular communications playing critical roles in disease progression and treatment responses. In this study, we utilized single-cell sequencing to dissect the intricate landscape of gastric cancer, identifying diverse cell populations and their interactions. We focused on the role of β-hydroxybutyrylation (Kbhb)-associated genes and their impact on the tumor microenvironment. By analyzing 189,700 single-cell profiles, we identified four distinct malignant epithelial cell subpopulations characterized by unique gene expression patterns. Among these, 20 β-hydroxybutyrylation (Kbhb)-associated genes were identified, including key genes such as MRPL13, LDHB, COX6C, FABP5, and RPS13, which were significantly associated with immune infiltration and tumor microenvironment remodeling. Hierarchical clustering based on these genes classified gastric cancer patients into two subgroups with distinct prognostic outcomes. Patients in the high-risk subgroup exhibited increased expression of pro-tumor genes and reduced immune infiltration, correlating with poorer survival. We further constructed a robust risk scoring model incorporating these genes, achieving AUC values of 0.72, 0.69, and 0.66 for predicting 1-, 3-, and 5-year survival in the TCGA dataset. These findings underscore the prognostic value of Kbhb-associated genes and their potential as therapeutic targets. This study not only provides insights into the molecular underpinnings of gastric cancer but also offers potential biomarkers for patient stratification and targets for therapeutic intervention.

摘要

胃癌具有高度异质性,其复杂的微环境和细胞间通讯在疾病进展和治疗反应中起着关键作用。在本研究中,我们利用单细胞测序剖析胃癌的复杂格局,识别不同的细胞群体及其相互作用。我们聚焦于β-羟基丁酰化(Kbhb)相关基因的作用及其对肿瘤微环境的影响。通过分析189,700个单细胞图谱,我们识别出四个不同的恶性上皮细胞亚群,其具有独特的基因表达模式。其中,识别出20个β-羟基丁酰化(Kbhb)相关基因,包括MRPL13、LDHB、COX6C、FABP5和RPS13等关键基因,这些基因与免疫浸润和肿瘤微环境重塑显著相关。基于这些基因的层次聚类将胃癌患者分为两个预后结果不同的亚组。高危亚组患者的促肿瘤基因表达增加,免疫浸润减少,与较差的生存率相关。我们进一步构建了一个包含这些基因的稳健风险评分模型,在TCGA数据集中预测1年、3年和5年生存率的AUC值分别为0.72、0.69和0.66。这些发现强调了Kbhb相关基因的预后价值及其作为治疗靶点的潜力。本研究不仅深入了解了胃癌的分子基础,还为患者分层提供了潜在的生物标志物以及治疗干预的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/e0068b48fdff/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/fc5345625bc7/ga1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/ed130c82744b/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/ab6614bb3061/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/2ea61d74256c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/b2bedd8c606f/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/1352c8e5af9d/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/5cb3e3c0ac96/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/8a3ca8cc0abb/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/f81d41910629/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/43146db7d5a7/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/e0068b48fdff/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/fc5345625bc7/ga1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/ed130c82744b/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/ab6614bb3061/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/2ea61d74256c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/b2bedd8c606f/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/1352c8e5af9d/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/5cb3e3c0ac96/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/8a3ca8cc0abb/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/f81d41910629/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/43146db7d5a7/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9164/11830287/e0068b48fdff/gr10.jpg

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本文引用的文献

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Novel targets for gastric cancer: The tumor microenvironment (TME), N6-methyladenosine (m6A), pyroptosis, autophagy, ferroptosis and cuproptosis.胃癌新靶点:肿瘤微环境(TME)、N6-甲基腺苷(m6A)、细胞焦亡、自噬、铁死亡和铜死亡。
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Construction of a hypoxia-immune-related prognostic panel based on integrated single-cell and bulk RNA sequencing analyses in gastric cancer.
基于单细胞和 bulk RNA 测序分析的胃癌缺氧免疫相关预后标志物panel 的构建。
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Control of protein stability by post-translational modifications.蛋白质翻译后修饰对其稳定性的调控。
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Novel post-translational modifications in the kidneys for human health and diseases.肾脏中的新型翻译后修饰与人类健康和疾病。
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Tumor microenvironment-mediated immune tolerance in development and treatment of gastric cancer.肿瘤微环境介导的胃癌发生发展及治疗中的免疫耐受。
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