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Single-cell RNA sequencing and spatial transcriptomics reveal the heterogeneity and intercellular communication of cancer-associated fibroblasts in gastric cancer.

作者信息

Zhang Xijie, Ren Bo, Liu Bo, Wang Rui, Li Sen, Zhao Yuzhou, Zhou Wence

机构信息

The Second Clinical Medical School, Lanzhou University, Lanzhou, China.

Department of General Surgery, Affiliated Cancer Hospital of Zhengzhou University & Henan Cancer Hospital, Zhengzhou, China.

出版信息

J Transl Med. 2025 Mar 18;23(1):344. doi: 10.1186/s12967-025-06376-8.


DOI:10.1186/s12967-025-06376-8
PMID:40102930
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11917039/
Abstract

BACKGROUND: Gastric cancer is a highly aggressive malignancy characterized by a complex tumor microenvironment (TME). Cancer-associated fibroblasts (CAFs), which are a key component of the TME, exhibit significant heterogeneity and play crucial roles in tumor progression. Therefore, a comprehensive understanding of CAFs is essential for developing novel therapeutic strategies for gastric cancer. METHODS: This study investigates the characteristics and functional information of CAF subtypes and explores the intercellular communication between CAFs and malignant epithelial cells (ECs) in gastric cancer by analyzing single-cell sequencing data from 24 gastric cancer samples. CellChat was employed to map intercellular communication, and Seurat was used to integrate single-cell sequencing data with spatial transcriptome data to reconstruct a comprehensive single-cell spatial map. The spatial relationship between apCAFs and cancer cells was analyzed using multicolor immunohistochemistry. RESULTS: Cells were categorized into nine distinct categories, revealing a positive correlation between the proportions of epithelial cells (ECs) and fibroblasts. Furthermore, six fibroblast subpopulations were identified: inflammatory (iCAFs), pericytes, matrix (mCAFs), antigen-presenting (apCAFs), smooth muscle cells (SMCs), and proliferative CAFs (pCAFs). Each of these subpopulations was linked to various biological processes and immune responses. Malignant ECs exhibited heightened intercellular communication, particularly with CAF subpopulations, through specific ligand-receptor interactions. High-density regions of CAF subpopulations displayed spatial exclusivity, with pericytes serving as a source for iCAFs, mCAFs, and apCAFs. Notably, malignant ECs and apCAFs showed increased interactions, with certain ligand-receptor pairs potentially impacting the prognosis of gastric cancer. Multiplex immunohistochemistry (mIHC) confirmed the close spatial proximity of apCAFs to cancer cells in gastric cancer. CONCLUSION: Our study provided a comprehensive characterization of CAF heterogeneity in gastric cancer and revealed the intricate intercellular networks within the TME. The identified CAF subpopulations and their interactions with malignant cells could serve as potential therapeutic targets.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/e4fb786f724a/12967_2025_6376_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/8935de0aad2d/12967_2025_6376_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/89db26cdde60/12967_2025_6376_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/e82ab7a80c41/12967_2025_6376_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/bb3bc46b0fa0/12967_2025_6376_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/f7f55a21dcc5/12967_2025_6376_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/e4fb786f724a/12967_2025_6376_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/8935de0aad2d/12967_2025_6376_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/89db26cdde60/12967_2025_6376_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/e82ab7a80c41/12967_2025_6376_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/bb3bc46b0fa0/12967_2025_6376_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/f7f55a21dcc5/12967_2025_6376_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/43af/11917039/e4fb786f724a/12967_2025_6376_Fig6_HTML.jpg

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引用本文的文献

[1]
Cancer associated fibroblasts in tumors: focusing on solid tumors and hematological malignancies.

Front Oncol. 2025-6-23

[2]
Roles and functions of tumor-infiltrating lymphocytes and tertiary lymphoid structures in gastric cancer progression.

Front Immunol. 2025-5-29

[3]
Dynamic monitoring and multi-pathway regulation of FBXO21 in renal clear cell carcinoma: from static marker to perspective of precision therapy.

J Transl Med. 2025-4-11

本文引用的文献

[1]
Exploring m6A modifications in gastric cancer: from molecular mechanisms to clinical applications.

Eur J Med Res. 2025-2-12

[2]
Crosstalk Between Cancer-associated Fibroblasts and Myeloid Cells Shapes the Heterogeneous Microenvironment of Gastric Cancer.

Curr Genomics. 2024

[3]
Spatial transcriptomic analysis of primary and metastatic pancreatic cancers highlights tumor microenvironmental heterogeneity.

Nat Genet. 2024-11

[4]
SMYD5 methylation of rpL40 links ribosomal output to gastric cancer.

Nature. 2024-8

[5]
Cancer-associated fibroblasts promote proliferation, angiogenesis, metastasis and immunosuppression in gastric cancer.

Matrix Biol. 2024-9

[6]
Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.

CA Cancer J Clin. 2024

[7]
Applications of single‑cell omics and spatial transcriptomics technologies in gastric cancer (Review).

Oncol Lett. 2024-2-14

[8]
Quercetin induces ferroptosis in gastric cancer cells by targeting SLC1A5 and regulating the p-Camk2/p-DRP1 and NRF2/GPX4 Axes.

Free Radic Biol Med. 2024-3

[9]
Define cancer-associated fibroblasts (CAFs) in the tumor microenvironment: new opportunities in cancer immunotherapy and advances in clinical trials.

Mol Cancer. 2023-10-2

[10]
Gastric cancer treatment: recent progress and future perspectives.

J Hematol Oncol. 2023-5-27

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