Cao Dong-Min, Rao Yin, Liu Tao, Yuan Wei-Qu
Department of Acupuncture, Shenzhen Traditional Chinese Medicine Hospital, The Fourth Clinical Medical College of Guangzhou University of Chinese Medicine, Shenzhen, China.
Zhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica, Zhongshan, China.
Chem Biol Drug Des. 2025 Feb;105(2):e70059. doi: 10.1111/cbdd.70059.
The incidence of cervical cancer is high among women globally. The potential therapeutic efficacy of luteolin in the treatment of cervical cancer has been identified. Therefore, we aim to elucidate the mechanism of action of luteolin in the treatment of cervical cancer through a comprehensive approach that integrates metabolomics with bioinformatics. The first step involved the identification of differential metabolites through UHPLC-Q-Orbitrap-MS, which were then utilized for enrichment analysis of metabolic pathways and to determine the targets associated with these differential metabolites. Subsequently, the differential analysis and WGCNA were employed to identify DEGs and functional module genes respectively. The common targets were obtained by intersecting the results from the aforementioned three analyses, followed by conducting GO and KEGG pathway enrichment analysis on these targets. Subsequently, PPI networks were constructed using these common targets, and key targets were identified utilizing the MCC, EPC, Degree, Closeness Centrality, Betweenness Centrality, and Bottleneck algorithms in the CytoHubba plug-in. The subsequent steps involved the analysis of key genes for constructing a nomogram, conducting a ROC curve, examining content expression and survival analysis, and ultimately employing molecular docking to investigate the interaction between luteolin and crucial targets. The metabolomics analysis revealed the identification of a total of 45 distinct metabolites in this study, primarily associated with amino acid and nucleotide metabolism. The intersection of 773 differential metabolite targets, 3493 cervical cancer differential genes, and 3245 WGCNA-associated module genes yielded a set of 32 target genes associated with luteolin therapy for cervical cancer. The GO and KEGG pathway enrichment analysis also revealed that these targets were primarily associated with amino acid metabolism and nucleotide metabolism. The CytoHubba plug-in was utilized to identify three key genes (DMNT1, EZH2, and GMPS) through the application of multiple algorithms. Additionally, the datasets GSE63514, GSE67522, and GEPIA2 revealed a significant upregulation of all three genes in tumor tissue. ROC analysis demonstrated the good predictive ability of these three hub genes. Finally, the molecular docking results demonstrated the high binding affinity of luteolin towards DMNT1, EZH2, and GMPS. In conclusion, this study has unveiled the potential of luteolin in modulating amino acid and nucleotide metabolism for the treatment of cervical cancer, thereby providing a theoretical foundation for further investigation into the intricate association between luteolin and cervical cancer.
全球女性宫颈癌发病率较高。木犀草素在治疗宫颈癌方面的潜在治疗效果已得到确认。因此,我们旨在通过将代谢组学与生物信息学相结合的综合方法,阐明木犀草素治疗宫颈癌的作用机制。第一步是通过超高效液相色谱-四极杆-轨道阱质谱法鉴定差异代谢物,然后将其用于代谢途径的富集分析,并确定与这些差异代谢物相关的靶点。随后,分别采用差异分析和加权基因共表达网络分析(WGCNA)来鉴定差异表达基因(DEGs)和功能模块基因。通过将上述三种分析的结果进行交叉,获得共同靶点,随后对这些靶点进行基因本体(GO)和京都基因与基因组百科全书(KEGG)通路富集分析。随后,使用这些共同靶点构建蛋白质-蛋白质相互作用(PPI)网络,并利用CytoHubba插件中的最大团中心性(MCC)、边介中心性(EPC)、度、紧密中心性、介数中心性和瓶颈算法鉴定关键靶点。后续步骤包括分析构建列线图的关键基因、进行ROC曲线分析、检测含量表达和生存分析,最终采用分子对接研究木犀草素与关键靶点之间的相互作用。代谢组学分析表明,本研究共鉴定出45种不同的代谢物,主要与氨基酸和核苷酸代谢有关。773个差异代谢物靶点、3493个宫颈癌差异基因和3245个WGCNA相关模块基因的交叉分析产生了一组32个与木犀草素治疗宫颈癌相关的靶点基因。GO和KEGG通路富集分析还表明,这些靶点主要与氨基酸代谢和核苷酸代谢有关。利用CytoHubba插件通过多种算法鉴定出三个关键基因(DNA甲基转移酶1(DMNT1)、EZH2和鸟苷酸磷酸合成酶(GMPS))。此外,数据集GSE63514、GSE67522和GEPIA2显示,这三个基因在肿瘤组织中均显著上调。ROC分析表明这三个核心基因具有良好的预测能力。最后,分子对接结果表明木犀草素与DMNT1、EZH2和GMPS具有高结合亲和力。总之,本研究揭示了木犀草素在调节氨基酸和核苷酸代谢以治疗宫颈癌方面的潜力,从而为进一步研究木犀草素与宫颈癌之间的复杂关联提供了理论基础。