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通过大麦基因的体外改组鉴定效应物结合的关键功能获得性残基

Identification of a Key Gain-of-Function Residue for Effector Binding by In Vitro Shuffling of Barley Genes.

作者信息

Zhang Xiaoxiao, Dagvadorj Bayantes, Gao Jialing, Molloy Lucy M, Crean Lauren M, Williams Simon J, Rathjen John P

机构信息

Research School of Biology, The Australian National University, Acton 2601, ACT, Australia.

Research School of Chemistry, The Australian National University, Acton 2601, ACT, Australia.

出版信息

Mol Plant Microbe Interact. 2025 Jun 6:MPMI11240146R. doi: 10.1094/MPMI-11-24-0146-R.

Abstract

Natural plant populations maintain high resistance () gene diversities that provide effective pathogen resistance; however, agricultural crops typically contain limited gene diversity, so resistance is often short-lived, as pathogens evolve rapidly to evade recognition. The () gene family of barley and wheat represents a rich source of natural genetic variation that is ideal for mining disease resistance specificities. genes encode immune receptor proteins of the nucleotide-binding leucine-rich repeat class that recognize unrelated plant pathogens by binding secreted virulence proteins termed effectors. Using DNA shuffling, we generated a variant library by recombining the barley and genes in vitro. The variant library was cloned into yeast generating approximately 4,000 independent clones and was screened for interaction with corresponding barley powdery mildew effectors AVR and AVR using a yeast two-hybrid assay. This yielded a number of MLA protein variants that interacted with AVR. Sequences of the interacting MLA variants can be clustered into three groups, all of which contain a critical residue from MLA13. Although MLA13 and MLA7 differ by 30 residues across the leucine-rich repeat domain, the replacement of leucine with serine at this position in MLA7 is necessary and sufficient for interaction with AVR in yeast and AVR-dependent immune signaling in planta. We have established a pipeline that evolves MLAs to recognize distinct pathogen effectors without the requirement for protein structural knowledge and the use of rational design. We suggest that these findings represent a step toward evolving novel recognition capabilities rapidly in vitro. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.

摘要

天然植物种群保持着高度的抗性()基因多样性,可提供有效的病原体抗性;然而,农作物通常含有有限的基因多样性,因此抗性往往是短暂的,因为病原体进化迅速以逃避识别。大麦和小麦的()基因家族代表了丰富的天然遗传变异来源,非常适合挖掘抗病特异性。这些基因编码核苷酸结合富含亮氨酸重复序列类的免疫受体蛋白,通过结合称为效应子的分泌毒力蛋白来识别不相关的植物病原体。利用DNA改组技术,我们通过体外重组大麦的和基因生成了一个变异文库。该变异文库被克隆到酵母中,产生了大约4000个独立克隆,并使用酵母双杂交试验筛选与相应大麦白粉病效应子AVR和AVR的相互作用。这产生了一些与AVR相互作用的MLA蛋白变体。相互作用的MLA变体的序列可分为三组,所有这些组都包含来自MLA13的一个关键残基。尽管MLA13和MLA7在富含亮氨酸的重复结构域上相差30个残基,但在MLA7的这个位置用丝氨酸取代亮氨酸对于在酵母中与AVR相互作用以及在植物中依赖AVR的免疫信号传导是必要且充分的。我们已经建立了一个流程,无需蛋白质结构知识和使用理性设计就能使MLA进化以识别不同的病原体效应子。我们认为这些发现代表了在体外快速进化新识别能力的一个步骤。[公式:见正文] 版权所有©2025作者。这是一篇根据CC BY-NC-ND 4.0国际许可分发的开放获取文章。

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