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通过酶的多效性探索新型功能酶的新见解。

New insights into exploring new functional enzymes through the enzyme promiscuity.

作者信息

Liu Wen-Long, Wen Zong-Hong, Li Qing-Yun, Liu Hai-Bo, Li Qun-Liang, Deng Shun-Zhang, Zeng Zheng-Yun, Luo Meng-Cheng, Tang Ai-Xing, Liu You-Yan

机构信息

School of Chemistry and Chemical Engineering, Guangxi University, Nanning 530004, Guangxi, PR China.

School of Chemistry and Chemical Engineering, Guangxi University, Nanning 530004, Guangxi, PR China; Key Laboratory of Guangxi Biorefinery, Nanning 530003, PR China.

出版信息

Int J Biol Macromol. 2025 Apr;304(Pt 1):140576. doi: 10.1016/j.ijbiomac.2025.140576. Epub 2025 Feb 2.

DOI:10.1016/j.ijbiomac.2025.140576
PMID:39904435
Abstract

Enzyme promiscuity, defined as the ability of enzymes to catalyze reactions beyond their primary physiological functions, has emerged as a pivotal concept in modern enzyme engineering. This review provides a comprehensive exploration of enzyme promiscuity and its implications for the discovery and development of novel functional enzymes. Through targeted strategies such as (semi-)rational design, directed evolution, and de novo design, enzyme promiscuity has been harnessed to broaden substrate scopes, enhance catalytic efficiencies, and adapt enzymes to diverse reaction conditions. These modifications often involve subtle alterations to the active site, which impact catalytic mechanisms and open new pathways for the synthesis and degradation of complex organic compounds. Striking a balance between maintaining native activity and enhancing promiscuous functions remains a significant challenge in enzyme engineering. Nevertheless, advances in structural biology and computational modeling offer promising strategies to overcome these obstacles. By elucidating the mechanistic basis of enzyme promiscuity, this review aims to deepen our understanding of this phenomenon. It underscores the necessity of further investigating the mechanisms underlying promiscuous enzymatic activity and highlights the importance of leveraging promiscuous enzymes to address industrial application demands and drive the development of next-generation biocatalysts.

摘要

酶的多效性被定义为酶催化其主要生理功能以外反应的能力,已成为现代酶工程中的一个关键概念。本综述全面探讨了酶的多效性及其对新型功能酶发现和开发的影响。通过(半)理性设计、定向进化和从头设计等靶向策略,酶的多效性已被用于拓宽底物范围、提高催化效率,并使酶适应不同的反应条件。这些修饰通常涉及对活性位点的细微改变,这会影响催化机制,并为复杂有机化合物的合成和降解开辟新途径。在维持天然活性和增强多效性功能之间取得平衡仍然是酶工程中的一项重大挑战。然而,结构生物学和计算建模的进展提供了克服这些障碍的有前景的策略。通过阐明酶多效性的机制基础,本综述旨在加深我们对这一现象的理解。它强调了进一步研究多效性酶活性背后机制的必要性,并突出了利用多效性酶满足工业应用需求和推动下一代生物催化剂发展的重要性。

相似文献

1
New insights into exploring new functional enzymes through the enzyme promiscuity.通过酶的多效性探索新型功能酶的新见解。
Int J Biol Macromol. 2025 Apr;304(Pt 1):140576. doi: 10.1016/j.ijbiomac.2025.140576. Epub 2025 Feb 2.
2
Hybrid schemes based on quantum mechanics/molecular mechanics simulations goals to success, problems, and perspectives.基于量子力学/分子力学模拟的混合方案的目标、问题和展望。
Adv Protein Chem Struct Biol. 2011;85:81-142. doi: 10.1016/B978-0-12-386485-7.00003-X.
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Shining a light on enzyme promiscuity.揭示酶的多功能性。
Curr Opin Struct Biol. 2017 Dec;47:167-175. doi: 10.1016/j.sbi.2017.11.001. Epub 2017 Nov 21.
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Unusual commonality in active site structural features of substrate promiscuous and specialist enzymes.底物宽泛性酶和专一性酶活性位点结构特征中的异常共性。
J Struct Biol. 2022 Mar;214(1):107835. doi: 10.1016/j.jsb.2022.107835. Epub 2022 Jan 31.
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Enzyme promiscuity: a mechanistic and evolutionary perspective.酶的多功能性:一种机制和进化的观点。
Annu Rev Biochem. 2010;79:471-505. doi: 10.1146/annurev-biochem-030409-143718.
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Molecular signatures-based prediction of enzyme promiscuity.基于分子特征的酶多功能性预测。
Bioinformatics. 2010 Aug 15;26(16):2012-9. doi: 10.1093/bioinformatics/btq317. Epub 2010 Jun 15.
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Enzyme promiscuity: engine of evolutionary innovation.酶的多功能性:进化创新的引擎。
J Biol Chem. 2014 Oct 31;289(44):30229-30236. doi: 10.1074/jbc.R114.572990. Epub 2014 Sep 10.
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In Silico Engineering of Enzyme Access Tunnels.酶进入隧道的计算机辅助工程
Methods Mol Biol. 2022;2397:203-225. doi: 10.1007/978-1-0716-1826-4_11.
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Facilitating the Evolution of Esterase Activity from a Promiscuous Enzyme (Mhg) with Catalytic Functions of Amide Hydrolysis and Carboxylic Acid Perhydrolysis by Engineering the Substrate Entrance Tunnel.通过改造底物进入通道促进具有酰胺水解和羧酸全水解催化功能的混杂酶(Mhg)的酯酶活性进化。
Appl Environ Microbiol. 2016 Oct 27;82(22):6748-6756. doi: 10.1128/AEM.01817-16. Print 2016 Nov 15.
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Catalytic promiscuity in biocatalysis: using old enzymes to form new bonds and follow new pathways.生物催化中的催化多效性:利用旧酶形成新键并遵循新途径。
Angew Chem Int Ed Engl. 2004 Nov 19;43(45):6032-40. doi: 10.1002/anie.200460416.

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