Donohue Mariah E, Lamb Alicia, Absangba Abigail E, Noromalala Eliette, Weisenbeck David R, Stumpf Rebecca M, Wright Patricia C
Department of Biology, University of Kentucky, Lexington, Kentucky, USA.
Department of Biological Sciences, Binghamton University, Binghamton, New York, USA.
Am J Primatol. 2025 Feb;87(2):e23732. doi: 10.1002/ajp.23732.
This study uses a biogeographic framework to identify patterns of gut microbiome divergence in an endangered lemur species endemic to Madagascar's southeastern rainforests, the Milne-Edwards's sifaka (Propithecus edwardsi). Specifically, we tested the effects of (1) geographic barriers, (2) habitat disturbance, and (3) geographic distance on gut microbiome alpha and beta diversity. We selected 10 social groups from 4 sites in Ranomafana National Park with varied histories of selective logging. Sites were spaced between 4 and 17 km apart falling on either side of two parallel barriers to animal movement: the Namorona River and the RN25 highway. Using 16S rRNA metabarcoding, we found the greatest beta diversity differentiation to occur between social groups, with significant divisions on opposite sides of geographic barriers (road/river). Habitat disturbance had the most significant effect on alpha diversity, though, contrary to many other studies, disturbance was associated with higher microbial species richness. Without biomedical context, it is unclear whether microbiome differences observed herein are neutral, adaptive, or maladaptive. However, microbiome divergence associated with the road/river may be a symptom of reduced host gene flow, warranting further investigation and perhaps conservation action (e.g., construction of wildlife bridges). Finally, this work demonstrates that significant microbiome variation can accrue over small sampling areas, lending new insight into host-microbe-environmental interactions.
本研究采用生物地理框架,以确定马达加斯加东南部雨林特有的濒危狐猴物种——米尔恩-爱德华氏冕狐猴(Propithecus edwardsi)肠道微生物群落的分化模式。具体而言,我们测试了(1)地理屏障、(2)栖息地干扰和(3)地理距离对肠道微生物群落α多样性和β多样性的影响。我们从拉努马法纳国家公园的4个地点选取了10个社会群体,这些地点有着不同的选择性采伐历史。各地点相距4至17公里,分布在动物移动的两个平行屏障两侧:纳莫罗纳河和RN25公路。通过16S rRNA宏条形码分析,我们发现社会群体之间的β多样性差异最大,在地理屏障(道路/河流)两侧存在显著分化。栖息地干扰对α多样性的影响最为显著,不过,与许多其他研究相反,干扰与更高的微生物物种丰富度相关。在没有生物医学背景的情况下,尚不清楚本文观察到的微生物群落差异是中性的、适应性的还是适应不良的。然而,与道路/河流相关的微生物群落分化可能是宿主基因流动减少的一个症状,值得进一步研究,或许还需要采取保护行动(例如,建造野生动物桥梁)。最后,这项工作表明,在小采样区域内也会出现显著的微生物群落变异,这为宿主-微生物-环境相互作用提供了新的见解。