• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

原核生物钙转运中的去磷酸化和离子结合

Dephosphorylation and ion binding in prokaryotic calcium transport.

作者信息

Prabudiansyah Irfan, Orädd Fredrik, Magkakis Konstantinos, Pounot Kevin, Levantino Matteo, Andersson Magnus

机构信息

Department of Chemistry, Umeå University, Umeå, Sweden.

ESRF, The European Synchrotron CS40220, 38043 Grenoble Cedex 9, France.

出版信息

Sci Adv. 2024 Oct 11;10(41):eadp2916. doi: 10.1126/sciadv.adp2916.

DOI:10.1126/sciadv.adp2916
PMID:39908574
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11468904/
Abstract

Calcium (Ca) signaling is fundamental to cellular processes in both eukaryotic and prokaryotic organisms. While the mechanisms underlying eukaryotic Ca transport are well documented, an understanding of prokaryotic transport remains nascent. LMCA1, a Ca adenosine triphosphatase (ATPase) from , has emerged as a prototype for elucidating structure and dynamics in prokaryotic Ca transport. Here, we used a multidisciplinary approach integrating kinetics, structure, and dynamics to unravel the intricacies of LMCA1 function. A cryo-electron microscopy (cryo-EM) structure of a Ca-bound E1 state showed ion coordination by Asp, Asn, and Glu. Time-resolved x-ray solution scattering experiments identified phosphorylation as the rate-determining step. A cryo-EM E2P state structure exhibited remarkable similarities to a SERCA1a E2-P* state, which highlights the essential role of the unique P-A domain interface in enhancing dephosphorylation rates and reconciles earlier proposed mechanisms. Our study underscores the distinctiveness between eukaryotic and prokaryotic Ca ATPase transport systems and positions LMCA1 as a promising drug target for developing antimicrobial strategies.

摘要

钙(Ca)信号传导对于真核生物和原核生物的细胞过程都至关重要。虽然真核生物钙转运的潜在机制已有充分记载,但对原核生物钙转运的了解仍处于起步阶段。来自[具体来源未提及]的钙腺苷三磷酸酶(ATP酶)LMCA1已成为阐明原核生物钙转运结构和动力学的原型。在这里,我们采用了一种结合动力学、结构和动力学的多学科方法来揭示LMCA1功能的复杂性。结合钙的E1状态的冷冻电子显微镜(cryo-EM)结构显示了由天冬氨酸、天冬酰胺和谷氨酸进行的离子配位。时间分辨X射线溶液散射实验确定磷酸化是速率决定步骤。冷冻电子显微镜E2P状态结构与SERCA1a E2-P*状态表现出显著相似性,这突出了独特的P-A结构域界面在提高去磷酸化速率方面的重要作用,并与早期提出的机制相契合。我们的研究强调了真核生物和原核生物钙ATP酶转运系统之间的差异,并将LMCA1定位为开发抗菌策略的一个有前景的药物靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/a9266c4afbd3/sciadv.adp2916-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/2d3db4c9083c/sciadv.adp2916-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/7d19fae9f230/sciadv.adp2916-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/b8faed04e258/sciadv.adp2916-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/4d255327c45e/sciadv.adp2916-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/3cc80a78c49b/sciadv.adp2916-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/a9266c4afbd3/sciadv.adp2916-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/2d3db4c9083c/sciadv.adp2916-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/7d19fae9f230/sciadv.adp2916-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/b8faed04e258/sciadv.adp2916-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/4d255327c45e/sciadv.adp2916-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/3cc80a78c49b/sciadv.adp2916-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85f7/11468904/a9266c4afbd3/sciadv.adp2916-f6.jpg

相似文献

1
Dephosphorylation and ion binding in prokaryotic calcium transport.原核生物钙转运中的去磷酸化和离子结合
Sci Adv. 2024 Oct 11;10(41):eadp2916. doi: 10.1126/sciadv.adp2916.
2
The Crystal Structure of the Ca-ATPase 1 from Listeria monocytogenes reveals a Pump Primed for Dephosphorylation.李斯特菌 Ca-ATPase 1 的晶体结构揭示了一种为去磷酸化而预先启动的泵。
J Mol Biol. 2021 Aug 6;433(16):167015. doi: 10.1016/j.jmb.2021.167015. Epub 2021 Apr 30.
3
Structure of the [Ca]E2P intermediate of Ca-ATPase 1 from Listeria monocytogenes.产单核细胞李斯特菌Ca-ATPase 1的[Ca]E2P中间体结构
EMBO Rep. 2025 Apr;26(7):1709-1723. doi: 10.1038/s44319-025-00392-x. Epub 2025 Feb 27.
4
Dynamics of P-type ATPase transport revealed by single-molecule FRET.单分子荧光共振能量转移揭示的P型ATP酶转运动力学
Nature. 2017 Nov 16;551(7680):346-351. doi: 10.1038/nature24296. Epub 2017 Nov 8.
5
Characterization of a Listeria monocytogenes Ca(2+) pump: a SERCA-type ATPase with only one Ca(2+)-binding site.李斯特菌 Ca(2+)泵的特性:一种仅具有一个 Ca(2+)结合位点的 SERCA 型 ATP 酶。
J Biol Chem. 2011 Jan 14;286(2):1609-17. doi: 10.1074/jbc.M110.176784. Epub 2010 Nov 3.
6
Crystallization and preliminary structural analysis of the Listeria monocytogenes Ca(2+)-ATPase LMCA1.单核细胞增生李斯特菌Ca(2+)-ATP酶LMCA1的结晶及初步结构分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jun 1;67(Pt 6):718-22. doi: 10.1107/S174430911101548X. Epub 2011 May 26.
7
Engineering a Prototypic P-type ATPase Listeria monocytogenes Ca(2+)-ATPase 1 for Single-Molecule FRET Studies.构建用于单分子荧光共振能量转移研究的原型P型ATP酶——单核细胞增生李斯特菌Ca(2+)-ATP酶1
Bioconjug Chem. 2016 Sep 21;27(9):2176-87. doi: 10.1021/acs.bioconjchem.6b00387. Epub 2016 Aug 24.
8
Critical roles of interdomain interactions for modulatory ATP binding to sarcoplasmic reticulum Ca2+-ATPase.结构域间相互作用对调节性ATP结合肌浆网Ca2+-ATP酶的关键作用。
J Biol Chem. 2014 Oct 17;289(42):29123-34. doi: 10.1074/jbc.M114.571687. Epub 2014 Sep 5.
9
Functional consequences of alterations to Thr247, Pro248, Glu340, Asp813, Arg819, and Arg822 at the interfaces between domain P, M3, and L6-7 of sarcoplasmic reticulum Ca2+-ATPase. Roles in Ca2+ interaction and phosphoenzyme processing.肌浆网Ca2+-ATP酶的结构域P、M3和L6-7之间界面处Thr247、Pro248、Glu340、Asp813、Arg819和Arg822改变的功能后果。在Ca2+相互作用和磷酸酶加工中的作用。
J Biol Chem. 2004 Dec 24;279(52):54426-37. doi: 10.1074/jbc.M410204200. Epub 2004 Oct 12.
10
Cryo-EM analysis provides new mechanistic insight into ATP binding to Ca -ATPase SERCA2b.低温电子显微镜分析为 ATP 与 Ca 2+-ATP 酶 SERCA2b 的结合提供了新的机制见解。
EMBO J. 2021 Oct 1;40(19):e108482. doi: 10.15252/embj.2021108482. Epub 2021 Aug 30.

引用本文的文献

1
Inter-Organellar Ca Homeostasis in Plant and Animal Systems.植物和动物系统中的细胞器间钙稳态
Cells. 2025 Aug 6;14(15):1204. doi: 10.3390/cells14151204.
2
Structure of the [Ca]E2P intermediate of Ca-ATPase 1 from Listeria monocytogenes.产单核细胞李斯特菌Ca-ATPase 1的[Ca]E2P中间体结构
EMBO Rep. 2025 Apr;26(7):1709-1723. doi: 10.1038/s44319-025-00392-x. Epub 2025 Feb 27.

本文引用的文献

1
Dynamic lipid interactions in the plasma membrane Na,K-ATPase.质膜钠钾ATP酶中的动态脂质相互作用
Biochim Biophys Acta Mol Cell Res. 2023 Oct;1870(7):119545. doi: 10.1016/j.bbamcr.2023.119545. Epub 2023 Jul 20.
2
Structure and transport mechanism of the human calcium pump SPCA1.人钙泵 SPCA1 的结构与传输机制。
Cell Res. 2023 Jul;33(7):533-545. doi: 10.1038/s41422-023-00827-x. Epub 2023 May 31.
3
Cryo-EM structures of human SPCA1a reveal the mechanism of Ca/Mn transport into the Golgi apparatus.冷冻电镜结构解析揭示人类 SPCA1a 蛋白将 Ca/Mn 转运进入高尔基体的分子机制。
Sci Adv. 2023 Mar 3;9(9):eadd9742. doi: 10.1126/sciadv.add9742.
4
Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.SERCA2b的多个亚状态结构揭示了催化循环中过渡步骤的构象重叠。
Cell Rep. 2022 Dec 6;41(10):111760. doi: 10.1016/j.celrep.2022.111760.
5
Cryo-EM of the ATP11C flippase reconstituted in Nanodiscs shows a distended phospholipid bilayer inner membrane around transmembrane helix 2.冷冻电镜下观察到在纳米碟中重组成形的 ATP11C 翻转酶,其跨膜螺旋 2 周围的磷脂双分子层内膜膨胀。
J Biol Chem. 2022 Jan;298(1):101498. doi: 10.1016/j.jbc.2021.101498. Epub 2021 Dec 17.
6
Tracking the ATP-binding response in adenylate kinase in real time.实时追踪腺苷酸激酶中ATP结合反应。
Sci Adv. 2021 Nov 19;7(47):eabi5514. doi: 10.1126/sciadv.abi5514. Epub 2021 Nov 17.
7
Cryo-EM analysis provides new mechanistic insight into ATP binding to Ca -ATPase SERCA2b.低温电子显微镜分析为 ATP 与 Ca 2+-ATP 酶 SERCA2b 的结合提供了新的机制见解。
EMBO J. 2021 Oct 1;40(19):e108482. doi: 10.15252/embj.2021108482. Epub 2021 Aug 30.
8
The Crystal Structure of the Ca-ATPase 1 from Listeria monocytogenes reveals a Pump Primed for Dephosphorylation.李斯特菌 Ca-ATPase 1 的晶体结构揭示了一种为去磷酸化而预先启动的泵。
J Mol Biol. 2021 Aug 6;433(16):167015. doi: 10.1016/j.jmb.2021.167015. Epub 2021 Apr 30.
9
Structural Basis for the Function of the C-Terminal Proton Release Pathway in the Calcium Pump.钙泵 C 端质子释放途径功能的结构基础。
Int J Mol Sci. 2021 Mar 29;22(7):3507. doi: 10.3390/ijms22073507.
10
Elusive Intermediate State Key in the Conversion of ATP Hydrolysis into Useful Work Driving the Ca Pump SERCA.难以捉摸的中间状态是ATP水解转化为驱动钙泵SERCA的有用功的关键。
J Phys Chem B. 2021 Mar 25;125(11):2921-2928. doi: 10.1021/acs.jpcb.1c00558. Epub 2021 Mar 15.