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参数化重置模型捕捉到小鼠生物钟的剂量依赖性夹带。

Parameterized resetting model captures dose-dependent entrainment of the mouse circadian clock.

作者信息

Masuda Kosaku, Yoshimoto Ryusuke, Li Ruoshi, Sakurai Takeshi, Hirano Arisa

机构信息

Institute of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.

International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Ibaraki, Japan.

出版信息

Nat Commun. 2025 Feb 6;16(1):1421. doi: 10.1038/s41467-025-56792-z.

Abstract

The phase response curve (PRC) represents the time-dependent changes in circadian rhythm phase following internal or external stimuli. However, this time dependence complicates PRC measurement and quantification owing to its variable shape with changing stimulus intensity. Our previous work demonstrated that resetting a desynchronized circadian clock (singularity response, SR) simplifies the analysis by requiring only amplitude and phase parameters. In this study, we construct a comprehensive model for phase resetting in the mouse circadian clock by converting PRCs into SR parameters. We analyze single-cell PRCs and show that the SR amplitude parameters for different stimulus concentrations follow the Hill equation. Additionally, the model predicts the combined effects of multiple stimuli and pre-treatment (background) on phase response by simple addition or subtraction of individual SR parameters. Experimental validation using SR measurements in mouse cells and tissues confirms the model's accuracy. This study demonstrates that SRs facilitate PRC quantification and reveal simple rules governing phase resetting properties under various conditions using SR parameters.

摘要

相位响应曲线(PRC)表示在内部或外部刺激后昼夜节律相位随时间的变化。然而,由于其形状随刺激强度变化而变化,这种时间依赖性使得PRC的测量和量化变得复杂。我们之前的工作表明,重置不同步的生物钟(奇异点响应,SR)仅需幅度和相位参数,从而简化了分析。在本研究中,我们通过将PRC转换为SR参数,构建了一个用于小鼠生物钟相位重置的综合模型。我们分析了单细胞PRC,并表明不同刺激浓度下的SR幅度参数遵循希尔方程。此外,该模型通过简单地加减单个SR参数来预测多种刺激和预处理(背景)对相位响应的综合影响。在小鼠细胞和组织中使用SR测量进行的实验验证证实了该模型的准确性。本研究表明,SR有助于PRC的量化,并揭示了使用SR参数在各种条件下控制相位重置特性的简单规则。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f6b/11802799/a13137c8e152/41467_2025_56792_Fig1_HTML.jpg

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