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奇异点响应揭示了植物生物钟的同步特性。

The singularity response reveals entrainment properties of the plant circadian clock.

作者信息

Masuda Kosaku, Tokuda Isao T, Nakamichi Norihito, Fukuda Hirokazu

机构信息

Graduate School of Engineering, Osaka Prefecture University, Osaka, Japan.

Research Fellow of Japan Society for the Promotion of Science, Tokyo, Japan.

出版信息

Nat Commun. 2021 Feb 8;12(1):864. doi: 10.1038/s41467-021-21167-7.

Abstract

Circadian clocks allow organisms to synchronize their physiological processes to diurnal variations. A phase response curve allows researchers to understand clock entrainment by revealing how signals adjust clock genes differently according to the phase in which they are applied. Comprehensively investigating these curves is difficult, however, because of the cost of measuring them experimentally. Here we demonstrate that fundamental properties of the curve are recoverable from the singularity response, which is easily measured by applying a single stimulus to a cellular network in a desynchronized state (i.e. singularity). We show that the singularity response of Arabidopsis to light/dark and temperature stimuli depends on the properties of the phase response curve for these stimuli. The measured singularity responses not only allow the curves to be precisely reconstructed but also reveal organ-specific properties of the plant circadian clock. The method is not only simple and accurate, but also general and applicable to other coupled oscillator systems as long as the oscillators can be desynchronized. This simplified method may allow the entrainment properties of the circadian clock of both plants and other species in nature.

摘要

昼夜节律时钟使生物体能够将其生理过程与昼夜变化同步。相位响应曲线通过揭示信号如何根据其施加的相位不同地调节时钟基因,从而让研究人员了解时钟的同步。然而,全面研究这些曲线很困难,因为通过实验测量它们成本很高。在这里,我们证明曲线的基本特性可从奇点响应中恢复,奇点响应可通过向处于去同步状态(即奇点)的细胞网络施加单个刺激轻松测量。我们表明拟南芥对光/暗和温度刺激的奇点响应取决于这些刺激的相位响应曲线的特性。测量到的奇点响应不仅能精确重建曲线,还能揭示植物昼夜节律时钟的器官特异性特性。该方法不仅简单准确,而且具有通用性,只要振荡器能够去同步,就适用于其他耦合振荡器系统。这种简化方法可能有助于了解自然界中植物和其他物种昼夜节律时钟的同步特性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a07/7870946/d56ec3997dec/41467_2021_21167_Fig1_HTML.jpg

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