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H isotropic chemical shift metrics for NMR crystallography of powdered molecular organics.

作者信息

Zakeri Fatemeh, Widdifield Cory M

机构信息

Department of Chemistry & Biochemistry, University of Regina, 3737 Wascana Pkwy, Regina, SK S4S 0A2, Canada.

出版信息

Phys Chem Chem Phys. 2025 Feb 19;27(8):4368-4382. doi: 10.1039/d4cp04354e.

Abstract

Hydrogen magnetic shielding values from gauge including projector augmented wave (GIPAW) density functional theory (DFT) calculations, when combined with experimental solid-state H nuclear magnetic resonance (NMR) chemical shift data collected on powdered microcrystalline organics, have been used to perform various crystal structure characterization tasks (, refinements, verifications, determinations). These tasks fall under the umbrella of 'NMR crystallography'. In several instances, an isotropic H chemical shift () root-mean-squared deviation (RMSD) metric has been applied during these studies (including the first crystal structure determination: M. Baias, J.-N. Dumez, P. H. Svensson, S. Schantz, G. M. Day and L. Emsley, Determination of the Crystal Structure of a Large Drug Molecule by Crystal Structure Prediction-Based Powder NMR Crystallography, , 2013, , 17501-17507). While it is assumed that the H RMSD metrics are converged, our study probes the robustness of these metrics. Specifically, we consider how the structure of the (H) RMSD metric varies depending on: (i) selected GIPAW DFT input parameters; (ii) the number of fitting parameters used during linear mapping; and (iii) the GIPAW DFT computational software. These (H) RMSD metrics were produced from a set of 24 benchmark crystal structures (428 crystallographically unique hydrogen atom environments). Interestingly, we find that the (H) RMSD metric structures are very robust to substantial degradation in the quality of the GIPAW DFT computations, which is unexplored in the NMR crystallography literature as prior studies focus on convergence rather than divergence. We then briefly consider the impact of our findings using the structure determination of thymol as an illustrative example and our results strongly suggest that if (H) RMSD metrics are being used, then the GIPAW DFT computations can be performed much more efficiently than at present. Overall, this should allow for more efficient NMR crystallography characterization tasks of important materials that contain H nuclei, such as organic pharmaceuticals.

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