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通过组学整合的乳酸菌研究新观念——乳酸菌组学

Lactobacillomics as a new notion in lactic acid bacteria research through omics integration.

作者信息

Kahraman Ilıkkan Özge

机构信息

Kahramankazan Vocational School, Department of Food Processing, Başkent University, Ankara, Türkiye, Turkey.

出版信息

World J Microbiol Biotechnol. 2025 Feb 11;41(2):68. doi: 10.1007/s11274-025-04285-y.

Abstract

Omics technologies are a set of disciplines that analyze large-scale molecular data to understand biological systems in a holistic way. These technologies aim to reveal the structure, functions and interactions of organisms by studying processes at many levels of biomolecules, from the genome to metabolism. Lactobacillomics is introduced as an interdisciplinary field that integrates multiple "omics" technologies-including genomics, transcriptomics, proteomics, metabolomics, and metagenomics- to provide a comprehensive insight into "lactic acid bacteria" species. Lactobacillomics aims to elucidate the genetic, metabolic, and functional characteristics of lactic acid bacteria (LAB) species, providing insights into the mechanisms underlying their probiotic effects and contributions to the host microbiome. By analyzing genomes and metabolic pathways, researchers can identify specific genes responsible for health-promoting functions and desirable fermentation characteristics, which can guide the development of targeted probiotic strains with optimized health benefits. The integration of these omics data allows facilitating the discovery of biomarkers for health and disease states, the development of new probiotics tailored to specific populations or health conditions, and the optimization of fermentation processes to enhance the safety, flavor, and nutritional profile of fermented foods. A comprehensive review and bibliometric analysis were conducted to provide an overview of this promising field between 2005 and 2025 by examining Web of Science Core Collection data. Research results reveal trending topics, future perspectives, and key areas of growth within lactic acid bacteria (LAB) studies, particularly as they intersect with omics technologies.

摘要

组学技术是一组通过全面分析大规模分子数据来理解生物系统的学科。这些技术旨在通过研究从基因组到代谢的生物分子多个层面的过程,揭示生物体的结构、功能和相互作用。乳酸杆菌组学作为一个跨学科领域被引入,它整合了多种“组学”技术,包括基因组学、转录组学、蛋白质组学、代谢组学和宏基因组学,以全面洞察“乳酸菌”物种。乳酸杆菌组学旨在阐明乳酸菌物种的遗传、代谢和功能特征,深入了解其益生菌作用及对宿主微生物群贡献的潜在机制。通过分析基因组和代谢途径,研究人员可以识别出负责促进健康功能和理想发酵特性的特定基因,这有助于开发具有优化健康益处的靶向益生菌菌株。整合这些组学数据有助于发现健康和疾病状态的生物标志物,开发针对特定人群或健康状况的新型益生菌,以及优化发酵过程以提高发酵食品的安全性、风味和营养成分。通过审查科学网核心合集数据,进行了全面的综述和文献计量分析,以概述2005年至2025年间这个充满前景的领域。研究结果揭示了乳酸菌研究中的热门话题、未来展望以及关键增长领域,特别是它们与组学技术的交叉点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7eb5/11811450/79015862392c/11274_2025_4285_Fig1_HTML.jpg

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