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SBP-box基因家族的系统发育和表达分析以增强[品种名称]的环境适应性和生产力

Phylogenetic and Expression Analysis of SBP-Box Gene Family to Enhance Environmental Resilience and Productivity in cv. .

作者信息

Gao Yusen, Wen Yingxin, Lin Qinmin, Feng Yizhuo, Shi Xinying, Xiao Siyao, Tumukunde Elisabeth, Zheng Kehui, Cao Shijiang

机构信息

College of Mechanical and Electrical Engineering, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Plants (Basel). 2025 Feb 1;14(3):422. doi: 10.3390/plants14030422.

DOI:10.3390/plants14030422
PMID:39942984
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11819660/
Abstract

Tieguanyin tea, a renowned oolong tea, is one of the ten most famous teas in China. The Squamosa Promoter Binding Protein (SBP)-box transcription factor family, widely present in plants, plays a crucial role in plant development, growth, and stress responses. In this study, we identify and analyze 22 genes at the genome-wide level. These genes were distributed unevenly across 11 chromosomes. Using and L. as model organisms, we constructed a phylogenetic tree to classify these genes into six distinct subfamilies. Collinearity analysis revealed 20 homologous gene pairs between and , 21 pairs between and , and 14 pairs between and Cis-acting element analysis indicated that light-responsive elements were the most abundant among the genes. Protein motif, domain, and gene architecture analyses demonstrated that members of the same subgroup shared similar exon-intron structures and motif arrangements. Furthermore, we evaluated the expression profiles of nine genes under light, shade, and cold stress using qRT-PCR analysis. Notably, , and were significantly upregulated under all three stresses. This study provides fundamental insights into the gene family and offers a novel perspective on the mechanisms of SBP transcription factor-mediated stress responses, as well as Tieguanyin tea's adaptation to environmental variations.

摘要

铁观音茶是一种著名的乌龙茶,是中国十大名茶之一。Squamosa启动子结合蛋白(SBP)盒转录因子家族广泛存在于植物中,在植物发育、生长和应激反应中起着关键作用。在本研究中,我们在全基因组水平上鉴定并分析了22个基因。这些基因在11条染色体上分布不均。以[具体植物1]和[具体植物2]为模式生物,我们构建了系统发育树,将这些基因分为六个不同的亚家族。共线性分析揭示了[具体植物1]和[具体植物2]之间有20对同源基因对,[具体植物1]和[具体植物3]之间有21对,[具体植物2]和[具体植物3]之间有14对。顺式作用元件分析表明,光响应元件在这些基因中最为丰富。蛋白质基序、结构域和基因结构分析表明,同一亚组的成员具有相似的外显子-内含子结构和基序排列。此外,我们使用qRT-PCR分析评估了九个[具体基因]基因在光照、遮荫和冷胁迫下的表达谱。值得注意的是,[具体基因1]、[具体基因2]和[具体基因3]在所有三种胁迫下均显著上调。本研究为[具体基因]基因家族提供了基础见解,并为SBP转录因子介导的应激反应机制以及铁观音茶对环境变化的适应性提供了新的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/ef5f912fa283/plants-14-00422-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/999829ac8178/plants-14-00422-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/24054cd4250d/plants-14-00422-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/bc1e9262a4c5/plants-14-00422-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/294d4846f9d0/plants-14-00422-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/4cba4673d6f9/plants-14-00422-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/7cc7735fdf77/plants-14-00422-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/847dd9fd3fc0/plants-14-00422-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/ef5f912fa283/plants-14-00422-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/999829ac8178/plants-14-00422-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/24054cd4250d/plants-14-00422-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/bc1e9262a4c5/plants-14-00422-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/294d4846f9d0/plants-14-00422-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/4cba4673d6f9/plants-14-00422-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/7cc7735fdf77/plants-14-00422-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/847dd9fd3fc0/plants-14-00422-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b1e/11819660/ef5f912fa283/plants-14-00422-g008.jpg

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本文引用的文献

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Seasonal variations and sensory profiles of oolong tea: Insights from metabolic analysis of Tieguanyin cultivar.铁观音品种代谢分析揭示乌龙茶的季节性变化和感官特征。
Food Chem. 2025 Jan 1;462:140977. doi: 10.1016/j.foodchem.2024.140977. Epub 2024 Sep 3.
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Livelihood and Food Security in the Context of Sustainable Agriculture: Evidence from Tea Agricultural Heritage Systems in China.可持续农业背景下的生计与粮食安全:来自中国茶农业遗产系统的证据
Foods. 2024 Jul 16;13(14):2238. doi: 10.3390/foods13142238.
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Genome-wide identification, evolution, and role of SPL gene family in beet (Beta vulgaris L.) under cold stress.
全基因组鉴定、进化及 SPL 基因家族在甜菜(Beta vulgaris L.)冷胁迫下的作用。
BMC Genomics. 2024 Jan 23;25(1):101. doi: 10.1186/s12864-024-09995-5.
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Genome-Wide Identification and Expression Analysis of the SBP-Box Gene Family in Loquat Fruit Development.基因组范围内鉴定和分析枇杷果实发育过程中 SBP 框基因家族。
Genes (Basel). 2023 Dec 23;15(1):23. doi: 10.3390/genes15010023.
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Cooperative transcriptional regulation by ATAF1 and HY5 promotes light-induced cotyledon opening in .ATAF1 和 HY5 通过协同转录调控促进. 光诱导的子叶张开。
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