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鹅绒委陵菜淀粉代谢基因家族的全基因组鉴定及对非生物胁迫因子的响应表达模式

Genome-wide identification of starch metabolism gene families in Potentilla anserina and the expression pattern in response to abiotic stress factors.

作者信息

Jiao Yangmiao, He Qin, Li Xu, Chen Yang, Tian Tingting, Cao Liang, Zhang Zaiqi

机构信息

Hunan Provincial Key Laboratory of Dong Medicine, Biomedical Research Institute, Hunan University of Medicine, Huaihua, 418000, China.

Hunan Provincial Key Laboratory for Synthetic Biology of Traditional Chinese Medicine, Biomedical Research Institute, Hunan University of Medicine, Huaihua, 418000, China.

出版信息

BMC Plant Biol. 2025 Feb 14;25(1):201. doi: 10.1186/s12870-025-06229-y.

Abstract

BACKGROUND

The tuberous roots of Potentilla anserina (Pan), which are called silverweed cinquefoil roots, serve as a source of starch for the inhabitants of the Qinghai-Tibet Plateau. They are also regarded as a valuable tonic food and herbal medicine in the ethnic medicine system. Starch plays a crucial part in the plant's life cycle, particularly during the growth stage and in response to abiotic stress. Moreover, numerous biological processes and regulatory networks are involved in the synthesis and accumulation of starch.

RESULTS

In this research, a combination of transcriptome and metabolomics approaches were employed to analyze the genes related to starch synthesis and degradation in Pan. The crucial genes involved in starch metabolism were identified, and the response characteristics of these genes to drought and low temperature treatments were investigated. Seven AMYs (Alpha-amylases) and 18 BAMs (Beta-amylases) were identified from the genome of Pan. Molecular phylogenetic analyses of AMYs and BAMs derived from 11 species of rosids were conducted respectively. AMYs of Pan and other species were clustered into 3 groups, whereas BAMs were classified into 4 groups. In the tuberous roots, when compared with the control conditions, 2 AMYs and 4 BAMs were upregulated, while 3 BAMs were downregulated, meanwhile, the contents of maltose and glucose-6-phosphate (G6P) were decreased, while the content of glucose-1-phosphate (G1P) was increased under drought treatment. In the tuberous roots under low temperature treatment, 1 BAM was upregulated, while 2 AMYs and 4 BAMs were downregulated compared with control. The response characteristics of AMYs and BAMs to drought and low temperature treatments were further verified through qPCR analysis.

CONCLUSIONS

In this research, the genes associated with starch synthesis in Pan were characterized, and the functions of AMYs and BAMs in abiotic stress treatments were elucidated. An overview of evolution of AMY and BAM gene families within rosids was also provided.

摘要

背景

鹅绒委陵菜(Potentilla anserina,简称Pan)的块根,即蕨麻,是青藏高原居民的淀粉来源。在民族医药体系中,它们也被视为珍贵的滋补食品和草药。淀粉在植物生命周期中起着关键作用,尤其是在生长阶段以及应对非生物胁迫时。此外,淀粉的合成和积累涉及众多生物过程和调控网络。

结果

在本研究中,采用转录组学和代谢组学相结合的方法分析Pan中与淀粉合成和降解相关的基因。鉴定了参与淀粉代谢的关键基因,并研究了这些基因对干旱和低温处理的响应特征。从Pan的基因组中鉴定出7个α -淀粉酶(AMYs)和18个β -淀粉酶(BAMs)。分别对来自11种蔷薇类植物的AMYs和BAMs进行了分子系统发育分析。Pan和其他物种的AMYs聚类为3组,而BAMs分为4组。在块根中,与对照条件相比,干旱处理下2个AMYs和4个BAMs上调,3个BAMs下调,同时麦芽糖和6 -磷酸葡萄糖(G6P)含量降低,而1 -磷酸葡萄糖(G1P)含量增加。在低温处理的块根中,与对照相比,1个BAM上调,2个AMYs和4个BAMs下调。通过qPCR分析进一步验证了AMYs和BAMs对干旱和低温处理的响应特征。

结论

本研究对Pan中与淀粉合成相关的基因进行了表征,阐明了AMYs和BAMs在非生物胁迫处理中的功能。还提供了蔷薇类植物中AMY和BAM基因家族的进化概述。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6411/11827173/c480b93aa72a/12870_2025_6229_Fig1_HTML.jpg

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