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(蜘蛛目:螯腹蛛科)物种的比较线粒体基因组学及其系统发育意义和进化见解

Comparative mitogenomics of species (Araneae: Cheiracanthiidae) with phylogenetic implication and evolutionary insights.

作者信息

Li Zhaoyi, Zhang Feng

机构信息

Key Laboratory of Zoological Systematics and Application of Hebei Province, College of Life Sciences, Hebei University, Baoding, Hebei, China.

Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, Hebei, China.

出版信息

PeerJ. 2025 Feb 14;13:e18314. doi: 10.7717/peerj.18314. eCollection 2025.

Abstract

The genus C. L. Koch, 1839 is the most species-rich genus of the family Cheiracanthiidae. Given the unavailability of information on the evolutionary biology and molecular taxonomy of this genus, here we sequenced nine mitochondrial genomes (mitogenomes) of species, four of which were fully annotated, and conducted comparative analyses with other well-characterized Araneae mitogenomes. We also provide phylogenetic insights on the genus . The circular mitogenomes of the contain 37 genes, including 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs) and one putative control region (CR). All genes show a high A+T bias, characterized by a negative AT skew and positive GC skew, along with numerous overlapped regions and intergenic spacers. Approximately half of the tRNAs lack TΨC and/or dihydrouracil (DHU) arm and are characterized with unpaired amino acid acceptor arms. Most PCGs used the standard ATN start codons and TAR termination codons. The mitochondrial gene order of differs significantly from the putative ancestral gene order (). Our novel phylogenetic analyses infer Cheiracanthiidae to be the sister group of Salticidae in BI analysis, but as sister to the node with Miturgidae, Viridasiidae, Corinnidae, Selenopidae, Salticidae, and Philodromidae in ML analysis. We confirm that is paraphyletic, for the first time using molecular phylogenetic approaches, with the earliest divergence estimated at 67 Ma. Our findings enhance our understanding of taxonomy and evolution.

摘要

C. L. Koch属(1839年)是螯蛛科中物种最丰富的属。鉴于该属进化生物学和分子分类学信息的缺乏,我们对9个物种的线粒体基因组(线粒体基因组)进行了测序,其中4个已完全注释,并与其他特征明确的蜘蛛目线粒体基因组进行了比较分析。我们还提供了关于该属的系统发育见解。该属的环状线粒体基因组包含37个基因,包括13个蛋白质编码基因(PCG)、22个转运RNA基因(tRNA)、2个核糖体RNA基因(rRNA)和1个假定的控制区(CR)。所有基因都表现出较高的A+T偏向性,其特征是负的AT偏斜和正的GC偏斜,同时还有许多重叠区域和基因间隔区。大约一半的tRNA缺乏TΨC和/或二氢尿嘧啶(DHU)臂,其特征是未配对的氨基酸接受臂。大多数PCG使用标准的ATN起始密码子和TAR终止密码子。该属的线粒体基因顺序与假定的祖先基因顺序有显著差异。我们新颖的系统发育分析推断,在贝叶斯推断(BI)分析中,螯蛛科是跳蛛科的姐妹群,但在最大似然法(ML)分析中,它是与狼蛛科、绿蛛科、姬蛛科、扁蛛科、跳蛛科和管巢蛛科组成的节点的姐妹群。我们首次使用分子系统发育方法证实该属是并系的,最早的分歧估计在6700万年前。我们的发现增进了我们对该属分类学和进化的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1567/11831973/887c3c7746b0/peerj-13-18314-g001.jpg

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