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Single cell transcriptomic analysis reveals tumor immune infiltration by macrophage cells gene signature in lung adenocarcinoma.

作者信息

Guo Xiaotong, Deng Youjun, Jiang Wenjun, Li Heng, Luo Yisheng, Zhang Huachuan, Wu Hao

机构信息

Department of Thoracic Surgery, Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center Shenzhen Cancer Hospital, Shenzhen, China.

Radiation Oncology Key Laboratory of Sichuan Province, Sichuan Cancer Hospital, Chengdu, China.

出版信息

Discov Oncol. 2025 Mar 3;16(1):261. doi: 10.1007/s12672-025-01834-7.


DOI:10.1007/s12672-025-01834-7
PMID:40029500
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11876514/
Abstract

BACKGROUND: Tumor-associated macrophages (TAMs) play pivotal roles in innate immunity and contribute to the advancement of lung cancer. We aimed to identify novel TAM-related biomarkers and significance of macrophage infiltration in lung adenocarcinoma (LUAD) through an integrative analysis of single-cell RNA-sequencing (scRNA-seq) data. To describe the cell atlas and construct a novel prognostic signature in LUAD. METHODS: The gene signature linked to TAMs was identified utilizing Scanpy from the scRNA-seq dataset GSE131907. Subsequent analysis involved evaluating the expression levels of these genes, their potential molecular mechanisms, and prognostic significance in LUAD using data from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. We also constructed a risk score models through LASSO Cox regression for these genes. The underlying mechanism was further elucidated through the application of GSEA, ESTIMATE, TIDE, and other bioinformatic algorithms. RESULTS: Single-cell atlas was described by analyze 29 scRNA-seq samples from 19 LUAD patients. The TAMs-related gene signature (TGS) was identified as an independent prognostic factor by LASSO Cox regression analysis using differential expression genes (DEGs) derived from pro- and anti-inflammatory macrophage cells. Risk score model including nine TAMs-related genes (FOSL1, ZNF697, ADM, UBE2S, TICAM1, S100P, BIRC3, TLE1, and DEFB1) were obtained for prognosis construction. Moreover, the risk model underwent additional validation in four external GEO cohorts: GSE31210, GSE72094, GSE26939, and GSE30219. Interestingly, TGS-high tumors revealed enrichments in TGF-β signaling and hypoxia pathways, which shown low immune infiltration and immunosuppression by ESTIMATE and TIDE algorithm. The TGS-high risk group exhibited lower richness and diversity in the T-cell receptor (TCR) repertoire. CONCLUSION: This study introduces a novel TGS score developed through LASSO Cox regression analysis, utilizing DEGs in pro- and anti-inflammatory macrophage cells. High TGS tumors exhibited enrichment in TGF-β signaling and hypoxia pathways, suggesting their potential utility in predicting prognosis and immune responses in patients with LUAD. These results offer promising implications for the development of therapeutic strategies for LUAD.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/63fbfd54def0/12672_2025_1834_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/1ccae057058f/12672_2025_1834_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/23ccff4020d2/12672_2025_1834_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/2090b96d2f1a/12672_2025_1834_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/bffa915ab983/12672_2025_1834_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/ae579459bb7f/12672_2025_1834_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/a5b4271790db/12672_2025_1834_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/63fbfd54def0/12672_2025_1834_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/1ccae057058f/12672_2025_1834_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/23ccff4020d2/12672_2025_1834_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/2090b96d2f1a/12672_2025_1834_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/bffa915ab983/12672_2025_1834_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/ae579459bb7f/12672_2025_1834_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/a5b4271790db/12672_2025_1834_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c09f/11876514/63fbfd54def0/12672_2025_1834_Fig7_HTML.jpg

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[1]
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Cancers (Basel). 2023-3-22

[2]
Multi-omics analysis unravels the underlying mechanisms of poor prognosis and differential therapeutic responses of solid predominant lung adenocarcinoma.

Front Immunol. 2023

[3]
Single-cell spatial immune landscapes of primary and metastatic brain tumours.

Nature. 2023-2

[4]
Antimicrobial and Immunomodulatory Potential of Cow Colostrum Extracellular Vesicles (ColosEVs) in an Intestinal In Vitro Model.

Biomedicines. 2022-12-15

[5]
Development of a copper metabolism-related gene signature in lung adenocarcinoma.

Front Immunol. 2022

[6]
Quantifying the Value of Multigene Testing in Resected Early Stage Lung Adenocarcinoma.

J Thorac Oncol. 2023-4

[7]
Integrating Single-cell RNA-seq to construct a Neutrophil prognostic model for predicting immune responses in non-small cell lung cancer.

J Transl Med. 2022-11-18

[8]
Macrophages in health and disease.

Cell. 2022-11-10

[9]
Integrated analysis of single-cell and bulk RNA-sequencing identifies a signature based on T-cell marker genes to predict prognosis and therapeutic response in lung squamous cell carcinoma.

Front Immunol. 2022

[10]
Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response.

Immunity. 2022-10-11

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