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RNA测序分析揭示了基因敲除小鼠肝脏中的转录组变化。

RNA-seq analysis reveals transcriptome changes in livers from knockout mice.

作者信息

Cheng Chew W, Pedicini Lucia, Alcala Cintli Morales, Deligianni Fenia, Smith Jessica, Murray Ryan D, Todd Harriet J, Forde Niamh, McKeown Lynn

机构信息

University of Leeds, Faculty of Medicine and Health, Leeds Institute of Cardiovascular and Metabolic Medicine, Leeds, LS2 9JT, UK.

出版信息

Biochem Biophys Rep. 2025 Feb 15;41:101944. doi: 10.1016/j.bbrep.2025.101944. eCollection 2025 Mar.

DOI:10.1016/j.bbrep.2025.101944
PMID:40034259
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11872658/
Abstract

is an evolutionarily conserved protein that encodes for the Rab GTPase Rab46, and the CRAC channel modulator, CRACR2A. Previous genome wide association studies have demonstrated the association of variants in the progression of non-alcoholic fatty liver disease (NAFLD). In this study we show that mice with global depletion of have significantly larger livers than their wild-type (WT) counterparts. We performed RNA-sequencing (RNA-seq) analysis of liver tissues to investigate differential global gene expression among and WT mice. Of the 69 differentially expressed genes (DEGs), analyses of biological processes found significant enrichment in liver and bile development, with 6 genes ( and ) involved in both processes. Specific consideration of possible roles of DEGs or their products in NAFLD progression to (NASH) and hepatocarcinoma (HCC), demonstrated DEGs in the livers of mice had roles in molecular pathways including lipid metabolism, inflammation, ER stress and fibrosis. The results in this study provide additional insights into molecular mechanisms responsible for increasing susceptibility of liver injuries associated with .

摘要

是一种进化保守蛋白,编码Rab GTP酶Rab46以及CRAC通道调节剂CRACR2A。先前的全基因组关联研究已证明非酒精性脂肪性肝病(NAFLD)进展中变异体的关联。在本研究中,我们表明全局缺失该蛋白的小鼠肝脏明显大于其野生型(WT)对照。我们对肝脏组织进行了RNA测序(RNA-seq)分析,以研究该蛋白缺失小鼠和WT小鼠之间的差异全局基因表达。在69个差异表达基因(DEG)中,生物学过程分析发现肝脏和胆汁发育有显著富集,有6个基因(具体基因未给出)参与这两个过程。对DEG或其产物在NAFLD进展为非酒精性脂肪性肝炎(NASH)和肝癌(HCC)中可能作用的具体考虑表明,该蛋白缺失小鼠肝脏中的DEG在包括脂质代谢、炎症、内质网应激和纤维化等分子途径中起作用。本研究结果为与该蛋白相关的肝脏损伤易感性增加的分子机制提供了更多见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/1d47894af7f3/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/259814390ecf/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/6a33058b9e21/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/7d42c0083965/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/f87911e26a2b/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/e55d7aefdb69/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/de886b35db96/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/723faee463a5/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/e88418c64919/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/1d47894af7f3/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/259814390ecf/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/6a33058b9e21/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/7d42c0083965/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/f87911e26a2b/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/e55d7aefdb69/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/de886b35db96/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/723faee463a5/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/e88418c64919/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3093/11872658/1d47894af7f3/gr9.jpg

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本文引用的文献

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Circulation. 2025 Mar 11;151(10):696-715. doi: 10.1161/CIRCULATIONAHA.124.070487. Epub 2024 Nov 27.
2
Rab46: a novel player in mast cell function.Rab46:肥大细胞功能中的一个新角色。
Discov Immunol. 2023 Dec 22;3(1):kyad028. doi: 10.1093/discim/kyad028. eCollection 2024.
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Integrating single-cell and bulk sequencing data to identify glycosylation-based genes in non-alcoholic fatty liver disease-associated hepatocellular carcinoma.
整合单细胞和批量测序数据,以鉴定非酒精性脂肪性肝病相关肝细胞癌中的基于糖基化的基因。
PeerJ. 2024 Mar 18;12:e17002. doi: 10.7717/peerj.17002. eCollection 2024.
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Characterization of diseased primary human hepatocytes in an all-human cell-based triculture system.在基于全人细胞的三细胞培养系统中对病变原代人肝细胞的表征。
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Macrophage-specific FGFR1 deletion alleviates high-fat-diet-induced liver inflammation by inhibiting the MAPKs/TNF pathways.成纤维细胞生长因子受体 1 特异性缺失通过抑制 MAPKs/TNF 通路减轻高脂肪饮食诱导的肝炎症。
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Oncogenesis. 2023 Oct 31;12(1):49. doi: 10.1038/s41389-023-00494-y.
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