Avelar Mayra, Coppola Carmen, d'Ettorre Alessio, Ienco Andrea, Parisi Maria Laura, Basosi Riccardo, Santucci Annalisa, Olivucci Massimo, Sinicropi Adalgisa
R2ES Lab, Department of Biotechnology, Chemistry and Pharmacy, University of Siena, 53100 Siena, Italy.
Italian National Council for Research - Institute for the Chemistry of OrganoMetallic Compounds (CNR-ICCOM), 50019 Sesto Fiorentino, Italy.
J Chem Theory Comput. 2025 Mar 25;21(6):3231-3245. doi: 10.1021/acs.jctc.4c01370. Epub 2025 Mar 4.
Bacteriorhodopsin (bR) is a light-harvesting membrane protein that represents a promising sensitizer of TiO for photovoltaic and photoelectrochemical devices. However, despite numerous experimental studies, the molecular-level understanding of the bR/TiO hybrid system is still unsatisfactory. In this contribution, we report the construction and analysis of an atomistic model of such a system. To do so, both steered molecular dynamics-molecular dynamics and quantum mechanics/molecular mechanics computations are applied to four different bR orientations on the anatase TiO surface. The resulting bR/TiO models are then used to compute the light absorption maxima changes relative to those of bR. We show that all four models reproduce the experimentally observed blue-shift value induced by bR binding on TiO and could be used to study the binding and binding-induced protein modifications. We conclude that the constructed models could provide a basis for future studies aiming to simulate the complex long-range electron transfer mechanism in bR/TiO-based solar energy conversion devices as well as in engineering bR to achieve enhanced efficiencies.
细菌视紫红质(bR)是一种光捕获膜蛋白,是用于光伏和光电化学器件的有前景的TiO敏化剂。然而,尽管有大量实验研究,但对bR/TiO混合体系的分子水平理解仍不尽人意。在本论文中,我们报道了该体系原子模型的构建与分析。为此,将引导分子动力学-分子动力学和量子力学/分子力学计算应用于锐钛矿TiO表面的四种不同bR取向。然后使用所得的bR/TiO模型来计算相对于bR的光吸收最大值变化。我们表明,所有四个模型都再现了实验观察到的bR与TiO结合引起的蓝移值,可用于研究结合以及结合诱导的蛋白质修饰。我们得出结论,构建的模型可为未来旨在模拟基于bR/TiO的太阳能转换器件中复杂的长程电子转移机制以及设计bR以提高效率的研究提供基础。