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细菌视紫红质/TiO混合系统的分子水平研究。

Study of a Bacteriorhodopsin/TiO Hybrid System at the Molecular Level.

作者信息

Avelar Mayra, Coppola Carmen, d'Ettorre Alessio, Ienco Andrea, Parisi Maria Laura, Basosi Riccardo, Santucci Annalisa, Olivucci Massimo, Sinicropi Adalgisa

机构信息

R2ES Lab, Department of Biotechnology, Chemistry and Pharmacy, University of Siena, 53100 Siena, Italy.

Italian National Council for Research - Institute for the Chemistry of OrganoMetallic Compounds (CNR-ICCOM), 50019 Sesto Fiorentino, Italy.

出版信息

J Chem Theory Comput. 2025 Mar 25;21(6):3231-3245. doi: 10.1021/acs.jctc.4c01370. Epub 2025 Mar 4.

DOI:10.1021/acs.jctc.4c01370
PMID:40037620
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11948329/
Abstract

Bacteriorhodopsin (bR) is a light-harvesting membrane protein that represents a promising sensitizer of TiO for photovoltaic and photoelectrochemical devices. However, despite numerous experimental studies, the molecular-level understanding of the bR/TiO hybrid system is still unsatisfactory. In this contribution, we report the construction and analysis of an atomistic model of such a system. To do so, both steered molecular dynamics-molecular dynamics and quantum mechanics/molecular mechanics computations are applied to four different bR orientations on the anatase TiO surface. The resulting bR/TiO models are then used to compute the light absorption maxima changes relative to those of bR. We show that all four models reproduce the experimentally observed blue-shift value induced by bR binding on TiO and could be used to study the binding and binding-induced protein modifications. We conclude that the constructed models could provide a basis for future studies aiming to simulate the complex long-range electron transfer mechanism in bR/TiO-based solar energy conversion devices as well as in engineering bR to achieve enhanced efficiencies.

摘要

细菌视紫红质(bR)是一种光捕获膜蛋白,是用于光伏和光电化学器件的有前景的TiO敏化剂。然而,尽管有大量实验研究,但对bR/TiO混合体系的分子水平理解仍不尽人意。在本论文中,我们报道了该体系原子模型的构建与分析。为此,将引导分子动力学-分子动力学和量子力学/分子力学计算应用于锐钛矿TiO表面的四种不同bR取向。然后使用所得的bR/TiO模型来计算相对于bR的光吸收最大值变化。我们表明,所有四个模型都再现了实验观察到的bR与TiO结合引起的蓝移值,可用于研究结合以及结合诱导的蛋白质修饰。我们得出结论,构建的模型可为未来旨在模拟基于bR/TiO的太阳能转换器件中复杂的长程电子转移机制以及设计bR以提高效率的研究提供基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cf1/11948329/b3b3a9c3a99b/ct4c01370_0013.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cf1/11948329/24158352fea8/ct4c01370_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cf1/11948329/8fa6c8a9885e/ct4c01370_0007.jpg
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Importance of imposing gauge invariance in time-dependent density functional theory calculations with meta-generalized gradient approximations.在含时密度泛函理论计算中采用元广义梯度近似时施加规范不变性的重要性。
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CP2K: An electronic structure and molecular dynamics software package - Quickstep: Efficient and accurate electronic structure calculations.
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Unidirectional electron injection and accelerated proton transport in bacteriorhodopsin based Bio-p-n junctions.基于细菌视紫红质的生物 p-n 结中的单向电子注入和加速质子传输。
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Excited-State Vibronic Dynamics of Bacteriorhodopsin from Two-Dimensional Electronic Photon Echo Spectroscopy and Multiconfigurational Quantum Chemistry.基于二维电子光子回波光谱和多组态量子化学的细菌视紫红质激发态振转动力学
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