Li Mingai, Yu Jiamei, Sartore Silvia, Bellini Erika, Bertoldi Daniela, Pilati Stefania, Saba Alessandro, Larcher Roberto, Sanità di Toppi Luigi, Varotto Claudio
Research and Innovation Centre, Fondazione Edmund Mach, via Mach 1, 38098 San Michele all'Adige, Trento, Italy.
NBFC, National Biodiversity Future Center, Palermo 90133, Italy.
Hortic Res. 2024 Nov 26;12(3):uhae334. doi: 10.1093/hr/uhae334. eCollection 2025 Mar.
Despite the paramount importance in metal(loid) detoxification by () genes, no comprehensive analysis of their evolutionary patterns has been carried out in land plants in general and in crops in particular. A phylogenetic large-scale analysis of gene duplication in angiosperms was carried out followed by recombinant protein assays as well as complementation analysis (growth, thiol-peptides, elements) of mutant with four representative genes from two model crop species, and . We uncovered a so far undetected ancient tandem duplication (D duplication) spanning the whole core eudicotyledon radiation. Complementation with genes from both D-subclades from and displayed clear conservation of the differences between D1 and D2 paralogous proteins in plant growth, phytochelatin, and glutathione pools, as well as element contents under metal(loid) stress. recombinant PCS analysis identified analogous patterns of differentiation, showing a higher activity of D2 genes, so far largely overlooked, compared to their paralogs from the D1 clade. This suggests that in many other crop species where the duplication is present, the D2 copy might play a significant role in metal(loid) detoxification. The retention of both paralogs and of their functional features for such long divergence time suggests that copy number could be constrained by functional specialization and/or gene dosage sensitivity. These results uncover the patterns of evolution in plant genomes and of functional specialization of their paralogs in the genomes of two important model crops.
尽管()基因在金属(类金属)解毒中至关重要,但总体而言,尚未对陆地植物尤其是作物中这些基因的进化模式进行全面分析。我们对被子植物中的基因复制进行了系统发育大规模分析,随后对来自两种模式作物物种(即和)的四个代表性基因的突变体进行了重组蛋白测定以及互补分析(生长、硫醇肽、元素)。我们发现了一个迄今为止未被检测到的古老串联重复(D重复),它跨越了整个核心真双子叶植物辐射范围。用来自和的两个D亚分支的基因进行互补,结果表明D1和D2旁系同源蛋白在植物生长、植物螯合肽和谷胱甘肽库以及金属(类金属)胁迫下的元素含量方面的差异具有明显的保守性。重组植物螯合肽合酶(PCS)分析确定了类似的分化模式,表明与D1分支的旁系同源基因相比,迄今很大程度上被忽视的D2基因具有更高的活性。这表明在许多存在该重复的其他作物物种中,D2拷贝可能在金属(类金属)解毒中发挥重要作用。这两个旁系同源基因及其功能特征在如此长的分化时间内得以保留,这表明拷贝数可能受到功能特化和/或基因剂量敏感性的限制。这些结果揭示了植物基因组中该基因的进化模式及其在两种重要模式作物基因组中旁系同源基因的功能特化。