Lebreton Elise, Ertz Damien, Lücking Robert, Aptroot Andre, Carriconde Fabian, Ah-Peng Claudine, Huang Jen-Pan, Chen Ko-Hsuan, Stenger Pierre-Louis, Cáceres Marcela Eugenia da Silva, van den Boom Pieter, Sérusiaux Emmanuël, Magain Nicolas
Biology, Evolution, Conservation, Inbios Research Center, University of Liège, Quartier Vallée 1, B-4000 Liège, Belgium University of Liège Liège Belgium.
Department of Research, Meise Botanic Garden, B-1860 Meise, Belgium Meise Botanic Garden Meise Belgium.
IMA Fungus. 2025 Feb 17;16:e144194. doi: 10.3897/imafungus.16.144194. eCollection 2025.
Foliicolous lichens grow on living leaves of vascular plants. They are mostly found in tropical to subtropical or temperate rainforests. Many phenotype-based species are considered as pantropical or even sub-cosmopolitan, either attributed to old ages, having existed prior to continental breakups or long-distance dispersal. We built a much expanded, global phylogeny of , the most diverse group of leaf-dwelling lichenised fungi. Our sampling encompassed six major biodiversity hotspots: MIOI (Madagascar and the Indian Ocean Islands), the Caribbean, New Caledonia, the Colombian Chocó, Mesoamerica and the Atlantic coast of Brazil. It was based on multilocus sequence data (mtSSU rDNA, nuLSU rDNA and RPB1), including 2207 sequences of 1256 specimens. Species delimitation methods combined with a phenotype matrix identified 473 putative species. Amongst these, 104 are confirmed as described, 213 are classified as cryptic or near cryptic (hidden diversity), 100 represent new species to science (identified on the basis of phenotype) and 56 remain unidentified. Amongst the 104 species with a valid name, 40.5% are distributed across 2-5 continents (lichenogeographical regions) by applying the phenotype-based species concept. However, using the integrative approach to delineate species, this estimate is reduced to 9%. We estimate the global species richness of at 1,861-2,356 species. The timing of species-level divergences suggests that the current distribution of foliicolous lichens is shaped more by long-distance dispersal and rapid diversification than by vicariance. The origin of the family and major clades appears to be in the Neotropics, with subsequent numerous dispersal events. Our results support the separation of three major lineages, corresponding to the former families , s.str. and , which should be recognised at the subfamily level.
叶生 lichens 生长在维管植物的活叶上。它们大多见于热带至亚热带或温带雨林。许多基于表型的物种被认为是泛热带的,甚至是亚世界性的,这要么归因于年代久远,在大陆分裂之前就已存在,要么归因于远距离扩散。我们构建了一个大幅扩展的全球系统发育树,该系统发育树属于叶生 lichenised 真菌中最多样化的类群。我们的采样涵盖了六个主要的生物多样性热点地区:MIOI(马达加斯加和印度洋岛屿)、加勒比地区、新喀里多尼亚、哥伦比亚乔科、中美洲和巴西大西洋沿岸。它基于多位点序列数据(线粒体小亚基 rDNA、核大亚基 rDNA 和 RPB1),包括 1256 个标本的 2207 个序列。物种界定方法与表型矩阵相结合,确定了 473 个假定物种。其中,104 个被确认为已描述物种,213 个被归类为隐性或近隐性(隐藏多样性),100 个代表科学上新发现的物种(基于表型鉴定),56 个仍未鉴定。在 104 个有有效名称的物种中,通过应用基于表型的物种概念,40.5%分布在 2 - 5 个大陆(地衣地理区域)。然而,使用综合方法来界定物种,这一估计降至 9%。我们估计全球物种丰富度为 1861 - 2356 种。物种水平分歧的时间表明,当前叶生 lichens 的分布更多地是由远距离扩散和快速多样化塑造的,而不是由隔离分化形成的。该科和主要分支的起源似乎在新热带地区,随后有大量的扩散事件。我们的结果支持将三个主要谱系分开,这三个谱系对应于以前的科 、 狭义的 和 ,应在亚科水平上予以认可。