确定驱动海洋沉积物中牛磺酸和蛋氨酸有机硫循环的活性微生物。
Identifying the active microbes driving organosulfur cycling from taurine and methionine in marine sediment.
作者信息
Coskun Ömer K, Orsi William D, D'Hondt Steven, Gomez-Saez Gonzalo V
机构信息
Department of Earth and Environmental Sciences, Ludwig-Maximilians-Universität München, Richard-Wagner Str. 10, 80333 Munich, Germany.
GeoBio-CenterLMU, Ludwig-Maximilians-Universität München, Richard-Wagner Str. 10, 80333 Munich, Germany.
出版信息
ISME Commun. 2025 Feb 25;5(1):ycaf033. doi: 10.1093/ismeco/ycaf033. eCollection 2025 Jan.
Studies on microbial sulfur cycling in marine sediment have primarily centered on the cycling of inorganic sulfur. The microbial diversity underlying the cycling of organosulfur compounds is largely unexplored. In this study, we present the first quantification of dissolved organic sulfur (DOS) microbial assimilation in marine surface sediments using C-DOS quantitative DNA stable isotope probing (qSIP). We sampled marine sediment from 493 m water depth on the Puerto Rico continental slope, measured C-assimilation from two DOS substrates (C-taurine and C-methionine), and compared the C-DOS assimilation to C-glucose uptake. Taurine utilization was confined to bacteria, whereas methionine was degraded by bacteria and archaea, including methanogenic . Globally widespread uncultivated clades of Gammaproteobacteria and Deltaproteobacteria were the main drivers of DOS cycling and exhibited increased assimilation of carbon from taurine and methionine, compared to glucose. Only one operational taxonomic unit (OTU) affiliated with was found to assimilate taurine and methionine, but not glucose, implying that microbes exclusively utilizing both DOS substrates as a carbon source in marine sediments are rare. Still, a substantial number of bacterial taxa exhibited a higher assimilation of C from taurine or methionine, compared to glucose, indicating their preference for both DOS substrates over glucose as a carbon source in the sediment. These results represent the first quantitative assessment of organosulfur cycling from taurine and methionine by uncultivated microbes in a marine benthic environment.
关于海洋沉积物中微生物硫循环的研究主要集中在无机硫的循环上。有机硫化合物循环背后的微生物多样性在很大程度上尚未得到探索。在本研究中,我们首次使用碳 - 溶解有机硫(C-DOS)定量DNA稳定同位素探测(qSIP)对海洋表层沉积物中溶解有机硫(DOS)的微生物同化作用进行了量化。我们从波多黎各大陆坡493米水深处采集了海洋沉积物样本,测量了两种DOS底物(C-牛磺酸和C-蛋氨酸)的碳同化作用,并将C-DOS同化作用与C-葡萄糖摄取进行了比较。牛磺酸的利用仅限于细菌,而蛋氨酸则被细菌和古菌降解,包括产甲烷菌。全球广泛分布的未培养γ-变形菌纲和δ-变形菌纲分支是DOS循环的主要驱动因素,与葡萄糖相比,它们对牛磺酸和蛋氨酸的碳同化作用增强。仅发现一个与[具体菌属]相关的操作分类单元(OTU)能够同化牛磺酸和蛋氨酸,但不能同化葡萄糖,这意味着在海洋沉积物中专门利用这两种DOS底物作为碳源的微生物很少见。尽管如此,与葡萄糖相比,大量细菌分类群对牛磺酸或蛋氨酸的碳同化作用更高,表明它们在沉积物中更喜欢将这两种DOS底物作为碳源而非葡萄糖。这些结果代表了对海洋底栖环境中未培养微生物对牛磺酸和蛋氨酸的有机硫循环的首次定量评估。