A significant challenge in developing reliable Brain-Computer Interfaces (BCIs) is the presence of artifacts in the acquired brain signals. These artifacts may lead to erroneous interpretations, poor fitting of models, and subsequent reduced online performance. Furthermore, BCIs in a home or hospital setting are more susceptible to environmental noise. Artifact handling procedures aim to reduce signal interference by filtering, reconstructing, and/or eliminating unwanted signal contaminants. While straightforward conceptually and largely undisputed as essential, suitable artifact handling application in BCI systems remains unsettled and may reduce performance in some cases. A potential confound that remains unexplored in the majority of BCI studies using these procedures is the lack of parity with online usage (e.g., online parity). This manuscript compares classification performance between frequently used offline digital filtering, using the whole dataset, and an online digital filtering approach where the segmented data epochs that would be used during closed-loop control are filtered instead. In a sample of healthy adults ( = 30) enrolled in a BCI pilot study to integrate new communication interfaces, there were significant benefits to model performance when filtering with online parity. While online simulations indicated similar performance across conditions in this study, there appears to be no drawback to the approach with greater online parity.