Li Jinxia, Liu Xiuming, Liu Yonghu
Department of Respiratory and Critical Care Medicine, General Hospital of Ningxia Medical University, Yinchuan, China.
Front Genet. 2025 Mar 5;16:1499996. doi: 10.3389/fgene.2025.1499996. eCollection 2025.
Chronic obstructive pulmonary disease (COPD) is projected to become the third leading cause of death worldwide. Despite extensive research over the past few decades, effective treatments remain elusive, making disease prevention and control a global challenge.
This study aimed to identify diagnostic key genes for COPD. We utilized the Gene Expression Omnibus database to obtain gene expression data specific to COPD. Differentially expressed genes (DEGs) were identified and analyzed through Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and Gene Set Enrichment Analysis. Integrated weighted gene co-expression network analysis was employed to examine related gene modules. To pinpoint key genes, we used SVM-RFE, RF, and LASSO.
A total of 1782 DEGs were discovered, many of which were enriched in various biological pathways and activities. Four key genes-, , , and -were identified. We observed a significant difference in immune infiltration between COPD and normal groups, indicating potential interactions between immune cells and these genes. The identified key genes were further validated using external datasets.
Our findings suggest that , , , and are potential biomarkers for COPD. Targeting these diagnostic genes with specific drugs may potentially offer new avenues for COPD management; however, this hypothesis remains preliminary and requires further investigation, as the study does not directly assess therapeutic interventions.
慢性阻塞性肺疾病(COPD)预计将成为全球第三大死因。尽管在过去几十年中进行了广泛研究,但仍未找到有效的治疗方法,这使得疾病的预防和控制成为一项全球性挑战。
本研究旨在确定COPD的诊断关键基因。我们利用基因表达综合数据库获取COPD特异性基因表达数据。通过基因本体论、京都基因与基因组百科全书和基因集富集分析来鉴定和分析差异表达基因(DEG)。采用综合加权基因共表达网络分析来研究相关基因模块。为了确定关键基因,我们使用了支持向量机递归特征消除法(SVM-RFE)、随机森林(RF)和套索回归(LASSO)。
共发现1782个DEG,其中许多在各种生物途径和活动中富集。确定了四个关键基因——、、和。我们观察到COPD组和正常组之间免疫浸润存在显著差异,表明免疫细胞与这些基因之间存在潜在相互作用。使用外部数据集对鉴定出的关键基因进行了进一步验证。
我们的研究结果表明,、、和是COPD的潜在生物标志物。用特定药物靶向这些诊断基因可能为COPD的治疗提供新途径;然而,这一假设仍属初步,需要进一步研究,因为该研究未直接评估治疗干预措施。