Rai Akhila Balakrishna, Codi Jalaluddin Akbar Kandel, Suchitha Giridhara Prema, Hemavathi Kadabagere Narayanaswamy, Dagamajalu Shobha, Abhinand Chandran S, Raju Rajesh, Prasad Thottethodi Subrahmanya Keshava
Center for Systems Biology and Molecular Medicine [An ICMR Collaborating Centre of Excellence 2024 (ICMR-CCoE 2024)], Yenepoya Research Centre, Yenepoya (Deemed to Be University), Mangalore, 575018, India.
Department of Surgical Oncology, Yenepoya Medical College and Hospital, Yenepoya (Deemed to Be University), Mangalore, 575018, India.
Discov Oncol. 2025 Mar 25;16(1):386. doi: 10.1007/s12672-025-02121-1.
Growth differentiation factor-15 (GDF15) is a cytokine/growth factor that belongs to the Transforming growth factor-ß (TGF-ß) protein family. The expression of GDF15 is low in most human organs under normal conditions. GDF15 is a stress-responsive cytokine primarily produced by macrophages in response to inflammatory stimuli. The altered expression of GDF15 is associated with many cancers due to the inflammation caused by the disease. GDF15 triggers the activity through its receptor Glial-derived neurotrophic factor-family receptor α-like (GFRAL) and mediates multiple downstream signaling cascades, which are involved in the progression of cancers. Considering the biological importance of GDF15 in different cancers, we applied data mining techniques to systematically compile and analyze the signaling events associated with GDF15 using NetPath criteria. This resulted in constructing a detailed GDF15-mediated signaling pathway map, enhancing our understanding of its molecular mechanisms in cancer. Furthermore, proteins linked to colorectal and breast cancer identified in our pathway map were cross-referenced with established cancer pathway databases to identify unannotated proteins, highlighting gaps in the current annotations. To investigate potential therapeutic strategies, we performed molecular docking simulations and identified Vitisifuran B as a novel inhibitor that could block the GDF15-GFRAL interaction. These findings suggest that Vitisifuran B could effectively modulate GDF15 signaling, offering a promising avenue for cancer therapeutics. This study underscores the power of computational approaches, such as data mining and molecular docking, in enhancing our understanding of GDF15 signaling in cancer and identifying potential inhibitors for therapeutic development.
生长分化因子-15(GDF15)是一种细胞因子/生长因子,属于转化生长因子-β(TGF-β)蛋白家族。在正常情况下,GDF15在大多数人体器官中的表达较低。GDF15是一种应激反应性细胞因子,主要由巨噬细胞在炎症刺激下产生。由于疾病引起的炎症,GDF15表达的改变与许多癌症相关。GDF15通过其受体胶质细胞源性神经营养因子家族受体α样蛋白(GFRAL)触发活性,并介导多个下游信号级联反应,这些反应参与癌症的进展。考虑到GDF15在不同癌症中的生物学重要性,我们应用数据挖掘技术,使用NetPath标准系统地汇编和分析与GDF15相关的信号事件。这导致构建了一个详细的GDF15介导的信号通路图,增强了我们对其在癌症中分子机制的理解。此外,我们在通路图中鉴定出的与结直肠癌和乳腺癌相关的蛋白质与已建立的癌症通路数据库进行交叉参考,以识别未注释的蛋白质,突出当前注释中的空白。为了研究潜在的治疗策略,我们进行了分子对接模拟,并确定葡萄呋喃素B是一种可以阻断GDF15-GFRAL相互作用的新型抑制剂。这些发现表明葡萄呋喃素B可以有效地调节GDF15信号传导,为癌症治疗提供了一条有前景的途径。这项研究强调了计算方法,如数据挖掘和分子对接,在增强我们对癌症中GDF15信号传导的理解以及识别潜在治疗开发抑制剂方面的作用。