Chen Bei, Bajramović Belmin, Vriesendorp Bastienne, Spaink Herman Pieter
Institute of Biology, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands.
Biology (Basel). 2025 Feb 28;14(3):247. doi: 10.3390/biology14030247.
PE_PGRS domain proteins represent a family of proteins found in pathogenic and non-pathogenic mycobacteria such as . This conserved family is characterized by two distinct regions denoted as the variable PGRS domain defined by glycine-rich repeats, and a PE domain consisting of two antiparallel alpha-helices. There are many indications that PE_PGRS proteins are involved in immunopathogenesis and virulence by evading or triggering the host immune response. However, there is not yet any information on their degree of specialization or redundancy. Computational analysis and structural annotation using AlphaFold3 combined with other tools reveals an exceptionally powerful and unprecedented ability to undergo phase separation by the PGRS domain. This suggests that PGRS's glycine-rich, multivalent, low-complexity composition supports phase separation while adopting a structured conformation, contrary to the disordered nature typical of such domains. While previously never reported, the hypothesized role of PGRS in virulence indicates a novel window into the seemingly ubiquitous role of phase separation in cellular compartmentalization and molecular dynamics. This review aims to summarize the current understanding of the PE_PGRS family and its various biological roles in the context of bioinformatic analyses of some interesting representatives of that are under control by host sterols. Based on the structural bioinformatics analysis, we discuss future approaches to uncover the mechanistic role of this intriguing family of mycobacterial proteins in both pathogenic and non-pathogenic mycobacteria.
PE_PGRS结构域蛋白代表了一类在致病性和非致病性分枝杆菌中发现的蛋白质家族。这个保守的家族具有两个不同的区域,一个是由富含甘氨酸的重复序列定义的可变PGRS结构域,另一个是由两个反平行α螺旋组成的PE结构域。有许多迹象表明,PE_PGRS蛋白通过逃避或触发宿主免疫反应参与免疫发病机制和毒力作用。然而,关于它们的专业化程度或冗余性尚无任何信息。使用AlphaFold3结合其他工具进行的计算分析和结构注释揭示了PGRS结构域具有异常强大且前所未有的相分离能力。这表明PGRS富含甘氨酸、多价、低复杂性的组成在采用结构化构象时支持相分离,这与这类结构域典型的无序性质相反。虽然此前从未有过报道,但PGRS在毒力方面的假设作用为相分离在细胞区室化和分子动力学中看似普遍存在的作用打开了一扇新窗口。这篇综述旨在总结目前对PE_PGRS家族的理解及其在受宿主甾醇调控的一些有趣分枝杆菌代表的生物信息学分析背景下的各种生物学作用。基于结构生物信息学分析,我们讨论了未来揭示这一有趣的分枝杆菌蛋白家族在致病性和非致病性分枝杆菌中的作用机制的方法。