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花生荚果和种子发育过程中组蛋白修饰基因家族的鉴定、特征分析及其表达模式

Identification and Characterization of Histone Modification Gene Families and Their Expression Patterns During Pod and Seed Development in Peanut.

作者信息

Chang Yingying, Gelaye Yohannes, Yao Ruonan, Yang Ping, Li Jihua, Liu Nian, Huang Li, Zhou Xiaojing, Chen Weigang, Yu Bolun, Jiang Huifang, Liao Boshou, Lei Yong, Luo Huaiyong

机构信息

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences (CAAS), Wuhan 430062, China.

Department of Horticulture, College of Agriculture and Natural Resources, Debre Markos University, Debre Markos P.O. Box 269, Ethiopia.

出版信息

Int J Mol Sci. 2025 Mar 13;26(6):2591. doi: 10.3390/ijms26062591.

Abstract

Histone methylation and acetylation play potential roles in plant growth and development through various histone modification (HM) genes. However, studies of HM genes are still limited in peanut ( L.), a globally important oilseed crop. Here, comprehensive identification and investigation of HM genes were performed using the whole genome of peanut, and a total of 207 encoding 108 histone methyltransferases, 51 histone demethylases, 16 histone acetylases, and 32 histone deacetylases were identified. Detailed analysis of these , including chromosome locations, gene structures, protein motifs, and protein-protein interactions, was performed. Tandem, segmental, transposed, dispersed, and whole-genome duplications were involved in the evolution and expansion of the HM gene families in peanut. Ka/Ks analysis indicated that the underwent purifying selection. The expression profiles of the 207 were investigated during the pod and seed development stages on the basis of the transcriptome sequencing results. Quantitative real-time PCR confirmed that eight were differentially expressed during pod and seed development. These results provide data support for further studying the epigenetic mechanism of peanut histones, deepen the understanding of seed development, and provide a new direction for the cultivation of more high-yield and high-quality peanut varieties.

摘要

组蛋白甲基化和乙酰化通过各种组蛋白修饰(HM)基因在植物生长发育中发挥潜在作用。然而,在全球重要的油料作物花生中,对HM基因的研究仍然有限。在此,利用花生全基因组对HM基因进行了全面鉴定和研究,共鉴定出207个基因,分别编码108个组蛋白甲基转移酶、51个组蛋白去甲基化酶、16个组蛋白乙酰转移酶和32个组蛋白脱乙酰酶。对这些基因进行了详细分析,包括染色体定位、基因结构、蛋白质基序和蛋白质-蛋白质相互作用。串联重复、片段重复、转座、分散重复和全基因组重复参与了花生HM基因家族的进化和扩张。Ka/Ks分析表明这些基因经历了纯化选择。基于转录组测序结果,研究了207个基因在荚果和种子发育阶段的表达谱。实时定量PCR证实,8个基因在荚果和种子发育过程中差异表达。这些结果为进一步研究花生组蛋白的表观遗传机制提供了数据支持,加深了对种子发育的理解,并为培育更多高产、优质花生品种提供了新方向。

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