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创建郑58的基因索引EMS突变体库以改进玉米遗传学研究。

Creating a gene-indexed EMS mutation library of Zheng58 for improving maize genetics research.

作者信息

Chong Leelyn, Su Huihui, Liu Yingpeng, Zheng Lingling, Tao Lianying, Bie Hai, Xiao Di, Yang Yang, Zhang Wanjun, Zhang Jing, Ren Jifei, Liu Huafeng, Ren Zhenzhen, Chen Yanhui, Xi Zhangying, Li Chengwei, Ku Lixia

机构信息

National Key Laboratory of Wheat and Maize Crop Science and Key Laboratory of Regulating and Controlling Crop Growth and Development Ministry of Education, College of Agronomy, Henan Agricultural University, Zhengzhou, 450046, Henan, China.

Zhengzhou Agricultural Science and Technology Research Institute, Zhengzhou, China.

出版信息

Theor Appl Genet. 2025 Mar 27;138(4):83. doi: 10.1007/s00122-025-04878-z.

DOI:10.1007/s00122-025-04878-z
PMID:40146355
Abstract

We created the Zheng58 EMS Mutation Library, which provides a valuable resource for future investigations into the functions and roles of specific genes in maize physiology and development. Understanding the genetic variations present within maize is fundamental to improving maize breeding programs and developing crops with desirable traits. In this work, the Gene-Indexed Ethyl Methanesulfonate (EMS) Mutation Library of Zheng58 in maize was created to accelerate maize genetics research. By chemically inducing mutations in the Zheng58 maize inbred line using (EMS), 426 M EMS lines were generated, of which 185 exhibited heritable phenotypic changes. Coupling with high throughput sequencing techniques, over two million mutations, encompassing single nucleotide polymorphisms (SNPs) and small insertions and deletions (InDels), were subsequently identified. Functional annotation of mutation sites further indicated that a significant number of mutations influences important cellular processes, including translation termination (8,279), splice site disruption leading to mis-splicing (9,504), and missense mutations affecting protein-coding sequences (52,494). Therefore, the Gene-Indexed EMS Mutation Library of maize Zheng58 provides a valuable resource for future investigations into the functions and roles of specific genes in maize physiology and development.

摘要

我们创建了郑58 EMS突变文库,该文库为今后研究特定基因在玉米生理和发育中的功能及作用提供了宝贵资源。了解玉米中存在的遗传变异对于改进玉米育种计划和培育具有理想性状的作物至关重要。在这项工作中,创建了玉米郑58的基因索引甲基磺酸乙酯(EMS)突变文库,以加速玉米遗传学研究。通过使用甲基磺酸乙酯(EMS)对郑58玉米自交系进行化学诱变,产生了426个M EMS株系,其中185个表现出可遗传的表型变化。结合高通量测序技术,随后鉴定出超过200万个突变,包括单核苷酸多态性(SNP)和小插入缺失(InDel)。突变位点的功能注释进一步表明,大量突变影响重要的细胞过程,包括翻译终止(8279个)、导致错误剪接的剪接位点破坏(9504个)以及影响蛋白质编码序列的错义突变(52494个)。因此,玉米郑58的基因索引EMS突变文库为今后研究特定基因在玉米生理和发育中的功能及作用提供了宝贵资源。

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Creating a gene-indexed EMS mutation library of Zheng58 for improving maize genetics research.创建郑58的基因索引EMS突变体库以改进玉米遗传学研究。
Theor Appl Genet. 2025 Mar 27;138(4):83. doi: 10.1007/s00122-025-04878-z.
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本文引用的文献

1
ZmABF4-ZmVIL2/ZmFIP37 module enhances drought tolerance in maize seedlings.ZmABF4-ZmVIL2/ZmFIP37 模块增强玉米幼苗的耐旱性。
Plant Cell Environ. 2024 Sep;47(9):3605-3618. doi: 10.1111/pce.14954. Epub 2024 May 15.
2
Boosting wheat functional genomics via an indexed EMS mutant library of KN9204.通过 KN9204 的索引 EMS 突变体文库来促进小麦功能基因组学。
Plant Commun. 2023 Jul 10;4(4):100593. doi: 10.1016/j.xplc.2023.100593. Epub 2023 Mar 21.
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De novo genome assembly and analyses of 12 founder inbred lines provide insights into maize heterosis.
对12个创始自交系进行从头基因组组装和分析,为玉米杂种优势提供了见解。
Nat Genet. 2023 Feb;55(2):312-323. doi: 10.1038/s41588-022-01283-w. Epub 2023 Jan 16.
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A multi-omics integrative network map of maize.玉米的多组学整合网络图谱。
Nat Genet. 2023 Jan;55(1):144-153. doi: 10.1038/s41588-022-01262-1. Epub 2022 Dec 29.
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De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.从头组装、注释和 26 个不同玉米基因组的比较分析。
Science. 2021 Aug 6;373(6555):655-662. doi: 10.1126/science.abg5289.
6
Genome assembly of the Chinese maize elite inbred line RP125 and its EMS mutant collection provide new resources for maize genetics research and crop improvement.中国玉米优良自交系RP125及其EMS突变体库的基因组组装为玉米遗传学研究和作物改良提供了新资源。
Plant J. 2021 Oct;108(1):40-54. doi: 10.1111/tpj.15421. Epub 2021 Aug 8.
7
: A Sequence-Indexed Resource of Transposon-Induced Maize Mutations for Functional Genomics Studies.: 一个基于序列索引的转座子诱导玉米突变资源,用于功能基因组学研究。
Plant Physiol. 2020 Oct;184(2):620-631. doi: 10.1104/pp.20.00478. Epub 2020 Aug 7.
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Genome-wide selection and genetic improvement during modern maize breeding.在现代玉米育种过程中的全基因组选择和遗传改良。
Nat Genet. 2020 Jun;52(6):565-571. doi: 10.1038/s41588-020-0616-3. Epub 2020 Apr 27.
9
A Sequence-Indexed Insertional Library for Maize Functional Genomics Study.用于玉米功能基因组学研究的序列索引插入文库。
Plant Physiol. 2019 Dec;181(4):1404-1414. doi: 10.1104/pp.19.00894. Epub 2019 Oct 21.
10
Patterns of genomic variation in Chinese maize inbred lines and implications for genetic improvement.中国玉米自交系的基因组变异模式及其对遗传改良的意义。
Theor Appl Genet. 2018 Jun;131(6):1207-1221. doi: 10.1007/s00122-018-3072-z. Epub 2018 Feb 28.